Query= MSMg01no481_j12.b1 MSMg01no481_j12.b1 CHROMAT_FILE:
MSMg01no481_j12.b1 PHD_FILE: MSMg01no481_j12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:17 2005
(669 letters)
>mm_chr1_77267390_77268457
Length = 1068
Score = 1239 bits (641), Expect = 0.0
Identities = 659/665 (99%), Gaps = 1/665 (0%)
Strand = Plus / Minus
Query: 1 tcactccttttggctaccaggagacctggatctgtcaaacctcttttgatccaatttttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 tcactccttttggctaccaggagacctggatctgtcaaacctcttttgatccaatttttt 805
Query: 61 ttttatcttctctctgactatttaaagggggtttcatcagaaaagatgagaacacacatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 ttttatcttctctctgactatttaaagggggtttcatcagaaaagatgagaacacacatt 745
Query: 121 agagtttgttgctgtggaaagtgattttctagcattgtggatgtagcacacaatgactct 180
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct: 744 agagtttgttgctgtggaaaatgattttctagcattgtggatgtagcacacgatgactct 685
Query: 181 atagcacacaaagatgctctgagcacgttggtatccttggctgacttttatcagagaacc 240
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 684 atagcacacaaagatgctctgagcacgttggtgtccttggctgacttttatcagagaacc 625
Query: 241 ctttgcttctctttctaatcagctgaggaccagttataggattgcataatattcaggatc 300
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 624 ctttgcttctctttctaatcagctgaggactagttataggattgcataatattcaggatc 565
Query: 301 ttaggatcaggatctattaacttttattaatttggcctttaaaaaaaaatcttcaaagtt 360
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 564 ttaggatcaggatctattaacttttattaatttggccttt-aaaaaaaatcttcaaagtt 506
Query: 361 ttcccttgtcagttgaagaacctcttaattctcttacacaccttcatgtgttttagaaag 420
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 505 ttcccttgtcagttgaagaacctcttcattctcttacacaccttcatgtgttttagaaag 446
Query: 421 atgcattgcttgaattaagagaactgtcctactctttactagctgttagttcccagtata 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atgcattgcttgaattaagagaactgtcctactctttactagctgttagttcccagtata 386
Query: 481 aacttgaagaggtcatactgttttcataggtcctgcagggcccttttgcaggctaagaga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aacttgaagaggtcatactgttttcataggtcctgcagggcccttttgcaggctaagaga 326
Query: 541 tgggttctgctattgtgcagctttagtattttcagagtagaaatcccaggagcaaagact 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgggttctgctattgtgcagctttagtattttcagagtagaaatcccaggagcaaagact 266
Query: 601 attttctaatatgcaatttgaaattcttggatttgtgattcacaaggtctcttgtggcat 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 attttctaatatgcaatttgaaattcttggatttgtgattcacaaggtctcttgtggcat 206
Query: 661 ctaca 665
|||||
Sbjct: 205 ctaca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1068
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1058
Effective search space: 697222
Effective search space used: 697222
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no481_j12.g1 MSMg01no481_j12.g1 CHROMAT_FILE:
MSMg01no481_j12.g1 PHD_FILE: MSMg01no481_j12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:17 2005
(620 letters)
>mm_chr1_77060837_77061856
Length = 1020
Score = 1170 bits (605), Expect = 0.0
Identities = 619/629 (98%), Gaps = 9/629 (1%)
Strand = Plus / Plus
Query: 1 caggacttagaggaagtgatggagaagagtatcagagaagccctgggccatcaggagagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggacttagaggaagtgatggagaagagtatcagagaagccctgggccatcaggagagg 260
Query: 61 ctgaaagctgagcatcgacacagagccaagattctcaagctaacgcttccagaggcagag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgaaagctgagcatcgacacagagccaagattctcaagctaacgcttccagaggcagag 320
Query: 121 cagcggcagcaatagcagcagcatcgtgtgaagcagccagagcaagagcagcttctgaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagcggcagcaatagcagcagcatcgtgtgaagcagccagagcaagagcagcttctgaag 380
Query: 181 gaggaaggccaggtctggctgggagtcatgaaagtgcagagatggagttgtagacctgca 240
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaggaaggccagatctggctgggagtcatgaaagtgcagagatggagttgtagacctgca 440
Query: 241 ggctggggacagtgtctagcccaggcagggccagggtacaaagcacgggggg-------- 292
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggctggggacagtgtctagcccaggcagggccagggtacaaagcacggggggcggggggg 500
Query: 293 -ggggggggaccagcttgtcctagcagagatgattctgtccttgacttgttggatgcagg 351
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gggggggggaccagcttgtcctagcagagatgattctgtccttgacttgttggatgcagg 560
Query: 352 ctcagtggcgaatgtggctgggagcacagagaatccttctatgggctgtggctccgtagg 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctcagtggcgaatgtggctgggagcacagagaatccttctatgggctgtggctccgtagg 620
Query: 412 gggagggccttcttcatggctccccatggtagatcctggggagaagagccattccatggt 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gggagggccttcttcatggctccccatggtagatcctggggagaagagccattccatggt 680
Query: 472 tctaaataagttcttttgtcagggcagaatgtggatgcataaaatcataccccacttctc 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tctaaataagttcttttgtcagggcagaatgtggatgcataaaatcataccccacttctc 740
Query: 532 agggagggcttggggttaaacaccttttgcagggaggaatgtctgggaacagaagcttct 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agggagggcttggggttaaacaccttttgcagggaggaatgtctgggaacagaagcttct 800
Query: 592 tggttaagccctgcaggcctctgggaacc 620
|||||||||||||||||||||||||||||
Sbjct: 801 tggttaagccctgcaggcctctgggaacc 829
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1020
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1010
Effective search space: 616100
Effective search space used: 616100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
