Query= MSMg01no481_p11.b1 MSMg01no481_p11.b1 CHROMAT_FILE:
MSMg01no481_p11.b1 PHD_FILE: MSMg01no481_p11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:46 2005
(694 letters)
>mm_chr1_78173601_78174694
Length = 1094
Score = 1253 bits (648), Expect = 0.0
Identities = 681/692 (98%), Gaps = 2/692 (0%)
Strand = Plus / Plus
Query: 4 gaattctttgggtttaccttgactccagcacttcttggacaactcagtggaacactgcct 63
|||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattctttggggtcagcttgactccagcacttcttggacaactcagtggaacactgcct 263
Query: 64 tctgggtcctccctaacagcaaggagagcgctcttggctaatctgatcctgtctgcacat 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tctgggtcctccctaacagcaaggagagcgctcttggctaatctgatcctgtctgcacat 323
Query: 124 attcgagacaggatgtgctgggaggaggggcactgggaacctggtcctttcctcctccag 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 attcgagacaggatgtgctgggaggaggggcactgggaacctggtcctttcctcctccag 383
Query: 184 aggcttacctccatggatgcctctaatctcaccttccctccatattaaaattggccagta 243
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 384 aggcttacctccatggatgcctctaatctcaccttccctccatattaaa-ttggccagta 442
Query: 244 ccaagatccctttgcaaagtgatgacacctctgacagatgaagctgttgggtttccatat 303
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 443 ccaagatccctttgcaaagtgatgacgcctctgacagatgaagctgttgggtttccatat 502
Query: 304 gaacaagggcaagccgaatggaaatgatgtgtgtgtgtggtacggtatcatgggaggagg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gaacaagggcaagccgaatggaaatgatgtgtgtgtgtggtacggtatcatgggaggagg 562
Query: 364 caggtggaagcaagacaagagagagaaaggaggagaagggaccagcccagaaactgactt 423
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 563 caggtggaagcaagacaagagagagaaaggaggagaaggggccagcccagaaactgactt 622
Query: 424 ctccccctacccacatgccagtggatgaagggaagcattttgaag-accttaggagagga 482
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 623 ctccccctacccacatgccagtggatgaagggaagcattttgaaataccttaggagagga 682
Query: 483 gggtagaggaccaggagattctcaagcatacctttggaaaagctggacttgtttaggggc 542
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 683 gggtagaggaccaggagattctcaagcatacctttggaaaaggtgaacttgtttaggggc 742
Query: 543 catgatgtcctataaagaactatctgagtgacagttcattttatacttcctaacattttt 602
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 743 catgatgtcctataaagaactatctgagtgacagttcattttatacttcctaacgttttt 802
Query: 603 ccaaaaggatttcccatgtacagaaatgtcagtatgaaagataggcattggggctggtga 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 ccaaaaggatttcccatgtacagaaatgtcagtatgaaagataggcattggggctggtga 862
Query: 663 gatggctcagtgggtaagagcacccgactgct 694
||||||||||||||||||||||||||||||||
Sbjct: 863 gatggctcagtgggtaagagcacccgactgct 894
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 694
Length of database: 1094
Length adjustment: 10
Effective length of query: 684
Effective length of database: 1084
Effective search space: 741456
Effective search space used: 741456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no481_p11.g1 MSMg01no481_p11.g1 CHROMAT_FILE:
MSMg01no481_p11.g1 PHD_FILE: MSMg01no481_p11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:46 2005
(674 letters)
>mm_chr1_78347301_78348374
Length = 1074
Score = 1193 bits (617), Expect = 0.0
Identities = 659/673 (97%)
Strand = Plus / Minus
Query: 1 actttgtagaccaggctggcctcaaactcagaaatccacctgcctctgcctcccgagtgc 60
||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct: 934 actttgtagaccaggctggcctcgaactcagaaatctacctgcctctgcctcccgagtgc 875
Query: 61 tattttctttttaacattaggcaatcaaggctttctagcccataaggaaaacaatggtga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 874 tattttctttttaacattaggcaatcaaggctttctagcccataaggaaaacaatggtga 815
Query: 121 ttaccaaaaaagatggcaaagaaaaagaaggaaggggcaacgcagaagaaatgagagcat 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 814 ttaccaaaaaagatggcaaagaaaaagaaggaaggggcaacgcagaagaaatgagagcac 755
Query: 181 gcaaaggtttacatctttcatctataggtccagctccgactacagctgggccatctacct 240
||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 754 acaaaggtttacatctttcatctataggtccagctcgggctacagctgggccatctacct 695
Query: 241 gctgccttaacatggaagggcgacttctaaggacaaaagctggagagaaaacagcacact 300
|||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct: 694 gctgccttaacatggaagggcgacttcttaggacaaaagctggagagaaaatagcacact 635
Query: 301 aatcattttcttctgcttcgttggcttctctcttaaggcccctctgtctaaaaccaagac 360
|||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct: 634 aatcattttcttctgcttcgttggtttctctcttaaggcccctctgtctaaaaaaaagac 575
Query: 361 taccgaagagggtgaagggctctgggtattgtgcagcttttaagaacggtaattatagcc 420
||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 574 taccggagagggtgaagggctctgggtattgtgcagcttttaagaacggtagttatagcc 515
Query: 421 cttatacaacccaactgtgggttttctcctggctgatccttcagttctcagctcatcctc 480
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 514 cttatacaacccaactgtgggttttctcctggctgatccttcagatctcagctcatcctc 455
Query: 481 ggaacagctgacaccttctctgtctttttctcaaggaatagtgtctgtgttgggtatcat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 ggaacagctgacaccttctctgtctttttctcaaggaatagtgtctgtgttgggtatcat 395
Query: 541 cagcaacggtgagcctgggctaccaattgggaaaaccttaatagcaggatacagtgatcc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 cagcaacggtgagcctgggctaccaattgggaaaaccttaatagcaggatacagtgatcc 335
Query: 601 aggttttccgtgaccttaaacctgagtctagaactgggtcttgcaattagacacaatctt 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 aggttttccgtgaccttaaacctgagtctagaactgggtcttgcaattagacacaatctt 275
Query: 661 gcttccttatgat 673
|||||||||||||
Sbjct: 274 gcttccttatgat 262
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1074
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1064
Effective search space: 706496
Effective search space used: 706496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
