BAC Information

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BAC

Clone NameMSMg01-481P22
Chromosome1 (Build37)
Map Location 9,536,003 - 9,536,629
singlet/doubletsinglet
Overlap geneRrs1
Upstream geneSntg1, LOC100039474, LOC620444, EG665007, LOC665103, LOC100039464, EG620853, LOC665138
Downstream geneAdhfe1, LOC620542, 3110035E14Rik, Mybl1, Vcpip1, LOC100039536, LOC665173, Sgk3, EG620986, LOC100039643, 6030422M02Rik, LOC100039596, 4930418G15Rik, Cops5, Cspp1, Arfgef1, Cpa6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-481P22.T7 (MSMg01no481_p22.b1)MSMg01-481P22.TJ (MSMg01no481_p22.g1)
ACCAG562270AG562271
length758745
length of high quality
(start - end)
623 (69 - 691)627 (73 - 699)
definitionCHROMAT_FILE: MSMg01no481_p22.b1 PHD_FILE: MSMg01no481_p22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:02:48 2005CHROMAT_FILE: MSMg01no481_p22.g1 PHD_FILE: MSMg01no481_p22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:02:48 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGGATCCGCGGA
ATTCTCAACTGAGTACCACTGAATGGCTGAGAAGCACCTGAAAAAAATGT
TCAGCATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCTTGAGATT
CCACCTCACACCAATCAAAATGGCTAAGATCATAAACTCAGGTGACACCA
GATGCTGGCGAGAATGTGGAGAAAGAGGAACACTACTCCACTGCTGGTGG
GATTGCACGCTTATACAACCACTCCGGAAGTCATTCTGGAGGCTCCTCAG
AAAACTGGACATAATACTACGGGAAGATCCAGCAATACCTCTCCTGGGCA
TATACCCAGAAGAAGTTCCAACTGGTAATAAGAACACATGCTCCACTATG
TTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATG
TCCCTCAATAGAAGAATGGATACAGAAAATGTGGTACATTTACACAATGG
AGTACTACTCAGCTATTAAAAACAATGGATTTATGAAATTCTTGGACAAA
TGGATGTATCTGCAGGATATCATCCTTAGTGCAGTAACCCAATCACAAAA
GAAGTCATTAGATATGCACTCACTGGTAAGTGGATATTAGCCCAGAAACA
TAGAACACCCAAGATACAATTTGTAAAACACAAGAAAATCAAGAAGAGGG
AAGACCAATGGGTGGATACTTCATTCCTCCTTAGAATAGGAAACAAAATA
CCCATGAN
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTTTGCTTCCCAAGCCTCCTTTCCTCT
TTTCTCCCTGACCCGGCGGGCCGCCCTTTCTCTTGCCCGAAGGTCCTTGC
CGGCCCCCTTTCCTCTTGCCTTTCTGGCTCATTTTCCTCCTCTTGGCAGC
CTCCTCCTGGTCCTCTTCCCGCATCTGCTTGTTGGTGGCCCTCGTCACGT
CCAGCCGAGGTTTCTTGCTGTTCATGACTCGAAGTAGCTCCAACTGGTTC
TTTTTCTCGGCTGCGAAGTCCCTAAAGAGGGGCTGAAACTTCCTCTTCTT
GCCGGAGCCCCGGGGAGCTTTCTCCTTGGGAAGGCGCTCCTGGAAGCGTC
CCACCGAAGCGGTGGAAACCTTGGCCACTTGCATGGCGCGGCCCAGCTCT
TCCTTACTCTGGTGTCCCGTAGGGTGCAGGCCGGCTGAGCTGGGCATCTG
CATCTTGTGCGCGCGAGCCAGGTTCCGCAGACGGTTCAGCTCATTCTTGG
CCACGCGTTCTTTCTTGGCCTGAGTCCTCTTGGCGAACTGGTCTTCCATG
GGGTCGGCGCTCCCAGGCACCTCGATCAGCCATTCCTTAGTGTCATCCCG
GGCGCGCTTGTAGCCCCAACGGCGCCGCCACTGGACACTCGCCTCGTCCA
CACGAGGTTGGTCTTCTTCTTGGGACGGATTCCCTTAAAGTGCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no481_p22.g1 MSMg01no481_p22.g1 CHROMAT_FILE:
MSMg01no481_p22.g1 PHD_FILE: MSMg01no481_p22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:48 2005
         (627 letters)



>mm_chr1_9535803_9536829
          Length = 1027

 Score = 1174 bits (607), Expect = 0.0
 Identities = 622/627 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttttgcttcccaagcctcctttcctcttttctccctgacccggcgggccgccctttctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 827 tttttgcttcccaagcctcctttcctcttttctccctgacccggcgggccgccctttctc 768

                                                                       
Query: 61  ttgcccgaaggtccttgccggccccctttcctcttgcctttctggctcattttcctcctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767 ttgcccgaaggtccttgccggccccctttcctcttgcctttctggctcattttcctcctc 708

                                                                       
Query: 121 ttggcagcctcctcctggtcctcttcccgcatctgcttgttggtggccctcgtcacgtcc 180
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 707 ttggcagcctcctcctggtcctcttccctcatctgcttgttggtggccctcgtcacgtcc 648

                                                                       
Query: 181 agccgaggtttcttgctgttcatgactcgaagtagctccaactggttctttttctcggct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 agccgaggtttcttgctgttcatgactcgaagtagctccaactggttctttttctcggct 588

                                                                       
Query: 241 gcgaagtccctaaagaggggctgaaacttcctcttcttgccggagccccggggagctttc 300
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 gcgaagtccccaaagaggggctgaaacttcctcttcttgccggagccccggggagctttc 528

                                                                       
Query: 301 tccttgggaaggcgctcctggaagcgtcccaccgaagcggtggaaaccttggccacttgc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 tccttgggaaggcgctcctggaagcgtcccaccgaagcggtggaaaccttggccacttgc 468

                                                                       
Query: 361 atggcgcggcccagctcttccttactctggtgtcccgtagggtgcaggccggctgagctg 420
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 467 atggcgcggcccagctcttccttactctggtgtccagtagggtgcaggccggctgagctg 408

                                                                       
Query: 421 ggcatctgcatcttgtgcgcgcgagccaggttccgcagacggttcagctcattcttggcc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 ggcatctgcatcttgtgcgcgcgagccaggttccgcagacggttcagctcattcttggcc 348

                                                                       
Query: 481 acgcgttctttcttggcctgagtcctcttggcgaactggtcttccatggggtcggcgctc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 acgcgttctttcttggcctgagtcctcttggcgaactggtcttccatggggtcggcgctc 288

                                                                       
Query: 541 ccaggcacctcgatcagccattccttagtgtcatcccgggcgcgcttgtagccccaacgg 600
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 287 ccaggcacctcgatcagccattctttagtgtcatcccgggcgcgcttgtagccccaacgg 228

                                      
Query: 601 cgccgccactggacactcgcctcgtcc 627
           |||||||||||| ||||||||||||||
Sbjct: 227 cgccgccactggccactcgcctcgtcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1027
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1017
Effective search space:   627489
Effective search space used:   627489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)