Query= MSMg01no482_a20.b1 MSMg01no482_a20.b1 CHROMAT_FILE:
MSMg01no482_a20.b1 PHD_FILE: MSMg01no482_a20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:53 2005
(580 letters)
>mm_chr1_70453536_70454519
Length = 984
Score = 978 bits (506), Expect = 0.0
Identities = 563/587 (95%), Gaps = 12/587 (2%)
Strand = Plus / Plus
Query: 4 ggaattcatggtgtcatggtgtgtggtgaggcacactggcaagcaggtatctatggcctg 63
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcattgtgccatggtgtgtggtgaggcacactggcaagcaggtatctatggcctg 263
Query: 64 tggggctgtgccctggtgggcatgtctgtgggtggcctggctgcccacagtctctcagtg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tggggctgtgccctggtgggcatgtctgtgggtggcctggctgcccacagtctctcagtg 323
Query: 124 tcttcctacttctgagctgtgtggcctttatgagtcctaggcatagaacaattttgggct 183
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tcttcctccttctgagctgtgtggcctttatgagtcctaggcatagaacaattttgggct 383
Query: 184 ttggctaccaagacaggcattaagctaagatgaataaacaga-tgttcttcccctgactg 242
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 384 ttggctaccaagacaggcattaagctaagatgaataaac-gaatgttcttcccctgactg 442
Query: 243 ctgtaagaacactatcatcaacaaggtgtctctgcccattgccagagggagctctttaca 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ctgtaagaacactatcatcaacaaggtgtctctgcccattgccagagggagctctttaca 502
Query: 303 ttcctatgcaagaagtttatataatcacattgataaaa-----aaaaatgactgtggaaa 357
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 503 ttcctatgcaagaagtttatataatcacattgataaaataaaaaaaaatgactgtggaaa 562
Query: 358 tcaaagaaaaaaaactagacattgtgttaaatctaaaataaatgagaaagcagagtatat 417
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tcaaagaaaaaaa-ctagacattgtgttaaatctaaaataaatgagaaagcagagtatat 621
Query: 418 agtcttttttttt----ctctcaaacaagacagggtttctctgtgtagccctggcttcct 473
||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 622 agtctttttttttttttctctcgaccaagacagggtttctctgtgtagccctggcttcct 681
Query: 474 ttgaactcaatttatagagcangctgacctcggactttgagatccacaggcctctgcctc 533
||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||
Sbjct: 682 ttgaactcaatttatagagcaggctgacctctgactttgagatccacaagcctctgcctc 741
Query: 534 ccaatcagattatatattcgtgtgcgtgtgcgtgtgcgtgtgcgtgt 580
|||||||||||||||||||||||| ||||| ||||| ||||| ||||
Sbjct: 742 ccaatcagattatatattcgtgtgtgtgtgtgtgtgtgtgtgtgtgt 788
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 984
Length adjustment: 10
Effective length of query: 570
Effective length of database: 974
Effective search space: 555180
Effective search space used: 555180
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no482_a20.g1 MSMg01no482_a20.g1 CHROMAT_FILE:
MSMg01no482_a20.g1 PHD_FILE: MSMg01no482_a20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:53 2005
(618 letters)
>mm_chr1_70599534_70600551
Length = 1018
Score = 1079 bits (558), Expect = 0.0
Identities = 575/584 (98%), Gaps = 8/584 (1%)
Strand = Plus / Minus
Query: 35 gattccctggcactgacttagtgttagagaaagaagctaagccttggttccacagagaga 94
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1018 gattccctggcactgacttagtgttagagaaagaagctaagccttggttccacagagaga 959
Query: 95 gcaatctcatttgggtagattgtaatgtactagggctggggatgtgacccagtggtaacg 154
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 958 gcaatctcgtttgggtagattgtaatgtactagggctggggatgtgacccagtggtaacg 899
Query: 155 taactgcctaaaatgcaagagacaccctggacttgatttttagcaaaacacacacacaca 214
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 898 taactgcctaaaatgcaagagacaccctggacttgatttttagc--aacacacacacaca 841
Query: 215 cacacacacacacacacacacacacacacacacacacacacaccacatagaaatgcaatt 274
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 840 cacacacacacacacacacacac-----c-cacacacacacaccacatagaaatgcaatt 787
Query: 275 tacaaagtgttacaggaacacagaaggactagacaaatgtggccccagtgagaatgtgga 334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 tacaaagtgttacaggaacacagaaggactagacaaatgtggccccagtgagaatgtgga 727
Query: 335 gaatcttattgactaaatattaacaagcttagattaaattagctaaacattgtctccagt 394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 gaatcttattgactaaatattaacaagcttagattaaattagctaaacattgtctccagt 667
Query: 395 gcagacaattccctcatcatctttgatacacacctggaatctggagatgtaagtttgtag 454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 gcagacaattccctcatcatctttgatacacacctggaatctggagatgtaagtttgtag 607
Query: 455 gtggttgtgagcaggcttagaagaaaggctgatttcctaggtaaagttcttagcaactta 514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 gtggttgtgagcaggcttagaagaaaggctgatttcctaggtaaagttcttagcaactta 547
Query: 515 catttaagactgtccatattgaggatccaggctctctaaatttttggaagccttctcaca 574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 catttaagactgtccatattgaggatccaggctctctaaatttttggaagccttctcaca 487
Query: 575 agatattctgctatatcttgtaatttattaaatttaatatagtg 618
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 agatattctgctatatcttgtaatttattaaatttaatatagtg 443
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 74
Number of extensions: 19
Number of successful extensions: 19
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1018
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1008
Effective search space: 612864
Effective search space used: 612864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
