Query= MSMg01no482_c13.b1 MSMg01no482_c13.b1 CHROMAT_FILE:
MSMg01no482_c13.b1 PHD_FILE: MSMg01no482_c13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:00 2005
(643 letters)
>mm_chr1_97769746_97770788
Length = 1043
Score = 779 bits (403), Expect = 0.0
Identities = 406/407 (99%)
Strand = Plus / Minus
Query: 237 aacaaacagagaaactctaggtatattatattgaaactgtacaaaatcaaacaagaagta 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1043 aacaaacagagaaactctaggtatattatattgaaactgtacaaaatcaaacaagaagta 984
Query: 297 tccttaaaggagccagatagaaatacttttttattttttattttagaagtggaagaacaa 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 983 tccttaaaggagccagatagaaatacttttttattttttattttagaagtggaagaacaa 924
Query: 357 atgtaagatctccttctacaatagccttagaaattctacaaagacagttaatgaaatatt 416
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 923 atgtaagatcttcttctacaatagccttagaaattctacaaagacagttaatgaaatatt 864
Query: 417 tatgttttaggtaaaaaaaaaaatctgtacaatctttcttttaaactaaagagaaaaaaa 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 863 tatgttttaggtaaaaaaaaaaatctgtacaatctttcttttaaactaaagagaaaaaaa 804
Query: 477 aacttcctcaagggaaaaaaatctacatttaagaaaatgacaaaaagtaatattatttag 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 aacttcctcaagggaaaaaaatctacatttaagaaaatgacaaaaagtaatattatttag 744
Query: 537 agtaagaacagaggtaaattgactgaaacctacataaagatacatgatgtgatgaatata 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 agtaagaacagaggtaaattgactgaaacctacataaagatacatgatgtgatgaatata 684
Query: 597 tttttgtggaaataatagtagaattggtatagtaaattatatgctta 643
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 tttttgtggaaataatagtagaattggtatagtaaattatatgctta 637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1043
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1033
Effective search space: 653889
Effective search space used: 653889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no482_c13.g1 MSMg01no482_c13.g1 CHROMAT_FILE:
MSMg01no482_c13.g1 PHD_FILE: MSMg01no482_c13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:00 2005
(674 letters)
>mm_chr1_97753415_97754488
Length = 1074
Score = 1251 bits (647), Expect = 0.0
Identities = 668/675 (98%), Gaps = 1/675 (0%)
Strand = Plus / Plus
Query: 1 attacttagaaaatctaatgacagccaaagaaaactattttgatcaaaagagttcttgaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attacttagaaaatctaatgacagccaaagaaaactattttgatcaaaagagttcttgaa 260
Query: 61 atgacaagaccatatttttaatttctctaatattcatccttgatgttttagagcaaaact 120
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 261 atgacaagaccatatttttaatttctctaatattcatccttgaagttttagagcaaaact 320
Query: 121 atttatatctagagaaaaattatttttaaaatgctatttatttttaaatgtatgagaatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atttatatctagagaaaaattatttttaaaatgctatttatttttaaatgtatgagaatt 380
Query: 181 ttcatgcctgtatatgagggcactgcacaggcatttggagcccatggaaactagaagcag 240
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcatgcctgtacatgagggcactgcacaggcatttggagcccatggaaactagaagcag 440
Query: 241 atgctagattccctggaattggagttacaaacagttataacttgccatgtaagtgctggc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgctagattccctggaattggagttacaaacagttataacttgccatgtaagtgctggc 500
Query: 301 aataaaacctgggtcctattcaagagcatcaagttctcttagctgccaagccaactttct 360
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aataaaacctgggtcctatgcaagagcatcaagttctcttagctgccaagccaactttct 560
Query: 361 atcctgagagatatattttttt-atgtgtctgattgatcatttctataaaggttatatcc 419
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct: 561 atcctgagagatatattttttttatgtgtctgattgatcatttctataaaggttatattc 620
Query: 420 agtgctacttttggaacaaatgttttgaaagctcaacgaagattgaaagacatgttgtaa 479
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agtgctaattttggaacaaatgttttgaaagctcaacgaagattgaaagacatgttgtaa 680
Query: 480 atctctgcaaatgccttatgttagtcaatattttgttttcttaagccataactcaaaatt 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atctctgcaaatgccttatgttagtcaatattttgttttcttaagccataactcaaaatt 740
Query: 540 gaaattgtgcttcattatgcaatatgaagatgagaattacagctttatttaaacacatat 599
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 741 gaaattgtgcttcattatgcaataagaagatgagaattacagctttatttaaacacatat 800
Query: 600 ggtcctattgcataattaaggaataaaaggtgaaagttaatcatcaatttatttttttaa 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ggtcctattgcataattaaggaataaaaggtgaaagttaatcatcaatttatttttttaa 860
Query: 660 tttaattttatttgt 674
|||||||||||||||
Sbjct: 861 tttaattttatttgt 875
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1074
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1064
Effective search space: 706496
Effective search space used: 706496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
