BAC Information

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BAC

Clone NameMSMg01-482C17
Chromosome1 (Build37)
Map Location 15,280,763 - 15,438,743
singlet/doubletdoublet
Overlap geneKcnb2
Upstream geneEya1, LOC665391, Msc, Smt3h2-ps4, EG665407, Trpa1, EG269105, LOC100039949, LOC100039959
Downstream genePpia-ps1_109.1, Terf1, Gm106, LOC665434, 4930444P10Rik, Rpl7, Rdh10, EG665282, Stau2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-482C17.T7 (MSMg01no482_c17.b1)MSMg01-482C17.TJ (MSMg01no482_c17.g1)
ACCAG562403AG562404
length718760
length of high quality
(start - end)		681 (38 - 718)618 (76 - 693)
definitionCHROMAT_FILE: MSMg01no482_c17.b1 PHD_FILE: MSMg01no482_c17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:03:01 2005CHROMAT_FILE: MSMg01no482_c17.g1 PHD_FILE: MSMg01no482_c17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:03:01 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,280,763 - 15,281,439)(15,438,368 - 15,438,743)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGG
ACTTCTCTGGAAACTCTATCATCAATAACACTAAAATTTTACTAAATGTT
CCATTTTAGACTTACAGAGAACATCAGAATATTTTCATTATAAATAAGAA
TATTTATTTTGTCTTCTTTAAATGAATAAAATAATTATGATAGTCCACAC
TTAGTTGAGCCAGGTCTTAAACATATTGAAAATACTTTTTCAGTGTTACA
ATCTCCTGATGGCGAAGGCATAACTAATGCCCTTTATATGCAAACATGAA
AACTAAAATTCACATATTTTTCCTGCCTAAAGTCACACAGGAAGGAAATG
GAGAAGTCTGTTTGAAGTCAGTATTTTGGGTTCAGGAACACTGTGACCCA
CTTTGATATTAGAGCATATCAAGAAGGGTGACCCTACATAGAACCAGGAA
GTATGTTTTCATTTCTTGATTCCTTGGGAGCTGTATATTCTCTCTAAGGG
TGGTCCTAAGAATAAAGGGAGGATTTGAAAGACCAAATTGAAGGGCATCT
TGTTGTTGTCTTAATTCAAGAGAAACCCATCTCCCACCCTCCATCCCCAA
TAAATGTTCACTGTGAATCTGACAGAAGAAAATAGCTTAGTTTTAGGTTG
ACTTTCAAATTGTGGTGGGGGCTGTCTTAAGAAGGTTAACATTGTTAGAC
AGCGTTGTGCTTATAGTG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTTGGCAGAGTTGGGAGATGAGGGG
GAAGGTAACCAGGGAGAACTAAGCAATATCACAAAAGGTGCATGAAACAG
AAAGGGGCTATCTAAGAAAATAGTTTCCTGGGATAGTAAATCTTTGAAGA
TTCATGTGTTGGAACCATAATATCCAAATATTGTTGGTTATATTTGAGAT
GAAACATTGGGGAAGATAAGTCAAGTTAAAGTCATGAGGTTAAGGCACCT
ATGATGAAATGACTTTAAAAGGAGGAGAGGTGAGATGGCAAGCCTACTTT
CTTACCACCTGATTCCCCTTGCCATGTTGTGATGCAGCAGAAAGGCTCTC
ACCAGAGGCAAGCATCTGGACACTGGACTTCTCAGCCTCCATACTGTGAG
AAGTAAATTCCTGTTCTTTATAAATGATCAAGCATCAGGTGTTATAGCAA
TACAAGAAGTACTAAGAGTTACTTCTAGATTCTCAGTGTTTGGAGATTAG
TCAAATATATCCCTTGATTTGTTTTGAGACTTGTGCTGTATTCTTGAGCG
CTAGATAAAAGTGGGCTGTTGAAGGCTGAGATCTTTTCAGGGATATAATA
TGTATCCTCTGTCTGCTGTAAGTACAGGGATCATGTCATGTTTTATAANA
CACACACATACACACAAATACTCTCACACACTGTCTCTCACATACACTCA
CACACACACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no482_c17.b1 MSMg01no482_c17.b1 CHROMAT_FILE:
MSMg01no482_c17.b1 PHD_FILE: MSMg01no482_c17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:01 2005
         (681 letters)



>mm_chr1_15280559_15281639
          Length = 1081

 Score = 1278 bits (661), Expect = 0.0
 Identities = 673/677 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaggacttctctggaaactctatcatcaataacactaaaattttactaaatgttc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaggacttctctggaaactctatcatcaataacactaaaattttactaaatgttc 264

                                                                       
Query: 65  cattttagacttacagagaacatcagaatattttcattataaataagaatatttattttg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cattttagacttacagagaacatcagaatattttcattataaataagaatatttattttg 324

                                                                       
Query: 125 tcttctttaaatgaataaaataattatgatagtccacacttagttgagccaggtcttaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tcttctttaaatgaataaaataattatgatagtccacacttagttgagccaggtcttaaa 384

                                                                       
Query: 185 catattgaaaatactttttcagtgttacaatctcctgatggcgaaggcataactaatgcc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 catattgaaaatactttttcagtgttacaatctcctgatggcgaaggcataactaatgcc 444

                                                                       
Query: 245 ctttatatgcaaacatgaaaactaaaattcacatatttttcctgcctaaagtcacacagg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctttatatgcaaacatgaaaactaaaattcacatatttttcctgcctaaagtcacacagg 504

                                                                       
Query: 305 aaggaaatggagaagtctgtttgaagtcagtattttgggttcaggaacactgtgacccac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aaggaaatggagaagtctgtttgaagtcagtattttgggttcaggaacactgtgacccac 564

                                                                       
Query: 365 tttgatattagagcatatcaagaagggtgaccctacatagaaccaggaagtatgttttca 424
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 565 tttgatattagagcatatcaagaagggtgaccctacatagaaccaggatgtatgttttca 624

                                                                       
Query: 425 tttcttgattccttgggagctgtatattctctctaagggtggtcctaagaataaagggag 484
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 625 tttcttgattccttgggagctgtatattctctctaagggtggtcctaagaataaagagag 684

                                                                       
Query: 485 gatttgaaagaccaaattgaagggcatcttgttgttgtcttaattcaagagaaacccatc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gatttgaaagaccaaattgaagggcatcttgttgttgtcttaattcaagagaaacccatc 744

                                                                       
Query: 545 tcccaccctccatccccaataaatgttcactgtgaatctgacagaagaaaatagcttagt 604
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tcccaccctccattcccaataaatgttcactgtgaatctgacagaagaaaatagcttagt 804

                                                                       
Query: 605 tttaggttgactttcaaattgtggtgggggctgtcttaagaaggttaacattgttagaca 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tttaggttgactttcaaattgtggtgggggctgtcttaagaaggttaacattgttagaca 864

                            
Query: 665 gcgttgtgcttatagtg 681
           || ||||||||||||||
Sbjct: 865 gcattgtgcttatagtg 881


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 681
Length of database: 1081
Length adjustment: 10
Effective length of query: 671
Effective length of database: 1071
Effective search space:   718641
Effective search space used:   718641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no482_c17.g1 MSMg01no482_c17.g1 CHROMAT_FILE:
MSMg01no482_c17.g1 PHD_FILE: MSMg01no482_c17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:01 2005
         (618 letters)



>mm_chr1_15437726_15438743
          Length = 1018

 Score =  719 bits (372), Expect = 0.0
 Identities = 375/376 (99%)
 Strand = Plus / Minus

                                                                        
Query: 243  aaaggaggagaggtgagatggcaagcctactttcttaccacctgattccccttgccatgt 302
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1018 aaaggaggagaggtgagatggcaagcctactttcttaccacccgattccccttgccatgt 959

                                                                        
Query: 303  tgtgatgcagcagaaaggctctcaccagaggcaagcatctggacactggacttctcagcc 362
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 958  tgtgatgcagcagaaaggctctcaccagaggcaagcatctggacactggacttctcagcc 899

                                                                        
Query: 363  tccatactgtgagaagtaaattcctgttctttataaatgatcaagcatcaggtgttatag 422
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 898  tccatactgtgagaagtaaattcctgttctttataaatgatcaagcatcaggtgttatag 839

                                                                        
Query: 423  caatacaagaagtactaagagttacttctagattctcagtgtttggagattagtcaaata 482
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838  caatacaagaagtactaagagttacttctagattctcagtgtttggagattagtcaaata 779

                                                                        
Query: 483  tatcccttgatttgttttgagacttgtgctgtattcttgagcgctagataaaagtgggct 542
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778  tatcccttgatttgttttgagacttgtgctgtattcttgagcgctagataaaagtgggct 719

                                                                        
Query: 543  gttgaaggctgagatcttttcagggatataatatgtatcctctgtctgctgtaagtacag 602
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718  gttgaaggctgagatcttttcagggatataatatgtatcctctgtctgctgtaagtacag 659

                            
Query: 603  ggatcatgtcatgttt 618
            ||||||||||||||||
Sbjct: 658  ggatcatgtcatgttt 643


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1018
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1008
Effective search space:   612864
Effective search space used:   612864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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