Query= MSMg01no482_e08.b1 MSMg01no482_e08.b1 CHROMAT_FILE:
MSMg01no482_e08.b1 PHD_FILE: MSMg01no482_e08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:09 2005
(676 letters)
>mm_chr1_15846652_15847727
Length = 1076
Score = 1174 bits (607), Expect = 0.0
Identities = 625/631 (99%)
Strand = Plus / Minus
Query: 4 ggaattcatatcttacgaaacctaattggatttaatatttttctgaatacctcatctcta 63
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 ggaattcatatcaaatgaaacctaattggatttaatatttttctgaatacctcatctcta 572
Query: 64 ttttgactttaaatgaatttataattcaatttatacccaataaagaaagcacttaaaccc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 ttttgactttaaatgaatttataattcaatttatacccaataaagaaagcacttaaaccc 512
Query: 124 tggttgctatatgagtgacttaatgaataatatttttaattctctggctttgctcccttg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 tggttgctatatgagtgacttaatgaataatatttttaattctctggctttgctcccttg 452
Query: 184 tagttcttccatttttcattatgaaatcagagagttggaataagatgaaagtggccttct 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 tagttcttccatttttcattatgaaatcagagagttggaataagatgaaagtggccttct 392
Query: 244 gggtagactctcctgacttaaacctgcacacaccactgttgtagtacctacatttacctg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 gggtagactctcctgacttaaacctgcacacaccactgttgtagtacctacatttacctg 332
Query: 304 agagaaacggttgtgaaggccagcagcaactctctgaacaagtattcttgcatagggatc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 agagaaacggttgtgaaggccagcagcaactctctgaacaagtattcttgcatagggatc 272
Query: 364 aatttgtaacttctattgacatagcccagtataaagaagtcttcttcgtgactgtaaaga 423
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 271 aatttgtaacttctattgacatagcccagtataaagaagtcttctttgtgactgtaaaga 212
Query: 424 aggtgtgaggggctagagatgtccctgtggttaagagcactggatactcttccagagaac 483
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 211 aggtgtgaggggctagagatgtccctgtggttaagagcactggatattcttccagagaac 152
Query: 484 ctgggtttgattccaagcccccacacagcaactaaccccagttccagagggatccaatcc 543
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151 ctgggtttgattcccagcccccacacagcaactaaccccagttccagagggatccaatcc 92
Query: 544 tctcttctagccctcacagacatacacttgggcaaaacactcatacatgtaaaataaaaa 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91 tctcttctagccctcacagacatacacttgggcaaaacactcatacatgtaaaataaaaa 32
Query: 604 aataaataattttaaaactgacttttaataa 634
|||||||||||||||||||||||||||||||
Sbjct: 31 aataaataattttaaaactgacttttaataa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1076
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1066
Effective search space: 709956
Effective search space used: 709956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no482_e08.g1 MSMg01no482_e08.g1 CHROMAT_FILE:
MSMg01no482_e08.g1 PHD_FILE: MSMg01no482_e08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:09 2005
(643 letters)
>mm_chr1_15797317_15798361
Length = 1045
Score = 1201 bits (621), Expect = 0.0
Identities = 641/649 (98%), Gaps = 6/649 (0%)
Strand = Plus / Plus
Query: 1 ccacttcaggtgatccaggtaagcaaaaaataactctcagatgtacccagccatttttag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 ccacttcaggtgatccaggtaagcaaaaaataactctcagatgtacccagccatttttag 256
Query: 61 gttttagtt-aatctatatgtagtcgagaactaagaatagccattcctgtttataaacta 119
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 257 gttttagttaaatctatatgtagtcgagaactaagaataaccattcctgtttataaacta 316
Query: 120 atatttaacactgtattgtgtctacacagtaggtgtactagtttgtgataatattttaat 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 atatttaacactgtattgtgtctacacagtaggtgtactagtttgtgataatattttaat 376
Query: 180 aaaaggtttttaaa-ttttttttttttagctattattcatggactacacagacttacagc 238
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 aaaaggtttttaaatttttttttttttagctattattcatggactacacagacttacagc 436
Query: 239 ttaccaattgaaaactgtgtatatatgtcagtttttgacaagagttgcatctggaaaggc 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 ttaccaattgaaaactgtgtatatatgtcagtttttgacaagagttgcatctggaaaggc 496
Query: 299 ccttggtaagtataaattttttattttatatttagaaatcttttaacttatttataaata 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 ccttggtaagtataaattttttattttatatttagaaatcttttaacttatttataaata 556
Query: 359 taacacatgggaaactgataatcgtattttcctgttttaggcgttgagaaagtttgctta 418
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 557 taacacatgggaaactgataatcatattttcctgttttaggcgttgagaaagtttgctta 616
Query: 419 cctgcatctgtcatacacataagcatatctaaagcaagcaaata--attttatctttcta 476
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 617 cctgcatctgtcatacacataagcatatctaaagcaagcaaatataattttatctttcta 676
Query: 477 gaacagtgactctcaaactttagcctgcctcagattatgttttaaagagtgtcttaaaac 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 gaacagtgactctcaaactttagcctgcctcagattatgttttaaagagtgtcttaaaac 736
Query: 537 agtagggtcattctgcctcactatgaatttagctcccaggtgattcagatgtagcgggag 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 agtagggtcattctgcctcactatgaatttagctcccaggtgattcagatgtagcgggag 796
Query: 597 gactacattttatagactgctggacactcggg--tgaagttttcttata 643
|||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 797 gactacattttatagactgctggacactcgggggtgaagttttcttata 845
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1045
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1035
Effective search space: 655155
Effective search space used: 655155
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
