BAC Information

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BAC

Clone NameMSMg01-482L12
Chromosome1 (Build37)
Map Location 94,582,924 - 94,719,720
singlet/doubletdoublet
Overlap genenone
Upstream geneTwist2, Hdac4, LOC100040419, LOC665883, Ndufa10, Olfr1416, Olfr1415, Olfr1414, Olfr1413, Olfr1412, Olfr1411, Olfr1410, Olfr12, Myeov2, Otos
Downstream geneGpc1, Ankmy1, Dusp28, LOC100040511, Rnpepl1, Capn10, Gpr35, Aqp12, Kif1a, Agxt, 2310007B03Rik, E030010N08Rik, Sned1, Mterfd2, LOC665966, Pask, Ppp1r7, Tmem16g, Hdlbp, Sept2, Farp2, Stk25, Bok, Thap4, Atg4b, Dtymk, Ing5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-482L12.T7 (MSMg01no482_l12.b1)MSMg01-482L12.TJ (MSMg01no482_l12.g1)
ACCAG562817AG562818
length683735
length of high quality
(start - end)		637 (47 - 683)646 (76 - 721)
definitionCHROMAT_FILE: MSMg01no482_l12.b1 PHD_FILE: MSMg01no482_l12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:03:41 2005CHROMAT_FILE: MSMg01no482_l12.g1 PHD_FILE: MSMg01no482_l12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:03:41 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,582,924 - 94,583,560)(94,719,075 - 94,719,720)
sequence
ATCACTATCAACAGAGGATCCGCGGAATTCTTCCTTACCTGAGCCATGTG
TAACACAGCTTGTGTGGGAAAGCCCAGAAGTTACAAAGGAGAGAGATGCA
GCTGCTATAGCAATGGCCCACAAAGGGCCATGAGCCTCGGGTTCCTGTGT
TTTCATCCTCATTCCTTCCTGGCCCTCTAGTTAGCACACTCACTCTCAAG
CACGCTATAACAGGAATCTCTCTGGCGGGGGCCTCCATATTAACAGTTGT
AAAAACTAACAAACCAACAAAAAACAGAGACTTATTCCCCTCTTTTGTCT
CTTTGCTTTTCTCTTCTTCCTCTTCTTTTGCCCACCATATTCAACCTTTG
TCTAGCTGGTTCTGTGTGCCTTGAAGCCTTGTAGGACTCTGACTAGATGT
ATATTCCCACCTCAGTGGTCTACCTTCTCCTGGACTGCTGCCAGCTGTCA
GCCTTGCAACACACACCTTGTCACCTTCTGTCTATCTATCTGCTTTGGGA
CAGAGCTTGGGACACAGTAGGAGCTCAATGGCTAGGTGAATCTGGGACAT
GGGGGCTCAAAAAGCACTTTCCTACTATGTGAATGCCAGGAGCCATAGAG
AAGGGATGGGATGGCGGGTTACCTTGTTCACTGCGGTGACAAAATGCCTA
ATGAGGTGTGATTTATGTGCAGAAAGGTTTATT

CGATTGATXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAAATGGGGGTGA
CCTATAGAAGGTTCGCGAAATGGACAGCCCCTCCCTCCTTTTGTATTGGG
GAAGGATCTCCTTAAGTTGCCCAGGCAGCTTTGAACTTGCAGCCCTTCTG
CCCATTCTCCTGAGTGCTGGGATTACAAGCCTGTACTGTCAGAGAGTATT
CATTTTTTCCTTCTTGTAAAAGCTGGTACGGAAGTATCAGTCTTTACGGC
TCTGTGCAAAGGGCTCACTCCCTGACAGAAATGGTGCTGTTGGAAGTTAA
TGATGAGTTTATCTTCATTTTGTTCTCTCCTTCCTGATGTTATCCAGGGC
CAACATCCTTCCTCACCCCTCAGGAGCCTTGGGTGGTATTTGAAATGAGA
TGCTGAGGGTTCCATTGGGCTGCTCACTGGGAGGGAGAGCGACAGGGAGA
CACGGAGCTGAAGCTTGCTTGCCAAGCTCCTGGAGGGGGGCAGGCCTTAG
CTCAGTTTCCAGTCTGCAGCCCACTGTGCATGGGTTGACCTTTCACACAC
CTACAGTACTGCCATATTGCCACAGGGACATGGTTTGAGTCCCTCTTCAA
AACTCACATGGAAACTCGGTCTCCAGGGCAGCAGTGTTGGAACTGAGGCT
CAGTAATGGCATTAGTGACATTATGTAAAGGTCTTGTGGGATGGGGTGAC
TGTCTTTCTAAGTCATGTGAGGATATAGTAGCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no482_l12.b1 MSMg01no482_l12.b1 CHROMAT_FILE:
MSMg01no482_l12.b1 PHD_FILE: MSMg01no482_l12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:41 2005
         (637 letters)



>mm_chr1_94582724_94583760
          Length = 1037

 Score = 1201 bits (621), Expect = 0.0
 Identities = 633/637 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtgtaacacagcttgtgtgggaaagcccagaagttacaaaggagagagatgcagctgct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtgtaacacagcttgtgtgggaaagcccagaagttacaaaggagagagatgcagctgct 260

                                                                       
Query: 61  atagcaatggcccacaaagggccatgagcctcgggttcctgtgttttcatcctcattcct 120
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 261 atagcaatggcccacaaagggccatgagccttgggttcctgtgttttcatcctcattcct 320

                                                                       
Query: 121 tcctggccctctagttagcacactcactctcaagcacgctataacaggaatctctctggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcctggccctctagttagcacactcactctcaagcacgctataacaggaatctctctggc 380

                                                                       
Query: 181 gggggcctccatattaacagttgtaaaaactaacaaaccaacaaaaaacagagacttatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggggcctccatattaacagttgtaaaaactaacaaaccaacaaaaaacagagacttatt 440

                                                                       
Query: 241 cccctcttttgtctctttgcttttctcttcttcctcttcttttgcccaccatattcaacc 300
           |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cccctctggtgtctctttgcttttctcttcttcctcttcttttgcccaccatattcaacc 500

                                                                       
Query: 301 tttgtctagctggttctgtgtgccttgaagccttgtaggactctgactagatgtatattc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttgtctagctggttctgtgtgccttgaagccttgtaggactctgactagatgtatattc 560

                                                                       
Query: 361 ccacctcagtggtctaccttctcctggactgctgccagctgtcagccttgcaacacacac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccacctcagtggtctaccttctcctggactgctgccagctgtcagccttgcaacacacac 620

                                                                       
Query: 421 cttgtcaccttctgtctatctatctgctttgggacagagcttgggacacagtaggagctc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cttgtcaccttctgtctatctatctgctttgggacagagcttgggacacagtaggagctc 680

                                                                       
Query: 481 aatggctaggtgaatctgggacatgggggctcaaaaagcactttcctactatgtgaatgc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aatggctaggtgaatctgggacatgggggctcaaaaagcactttcctactatgtgaatgc 740

                                                                       
Query: 541 caggagccatagagaagggatgggatggcgggttaccttgttcactgcggtgacaaaatg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 caggagccatagagaagggatgggatggcgggttaccttgttcactgcggtgacaaaatg 800

                                                
Query: 601 cctaatgaggtgtgatttatgtgcagaaaggtttatt 637
           ||||| |||||||||||||||||||||||||||||||
Sbjct: 801 cctaacgaggtgtgatttatgtgcagaaaggtttatt 837


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1037
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1027
Effective search space:   643929
Effective search space used:   643929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no482_l12.g1 MSMg01no482_l12.g1 CHROMAT_FILE:
MSMg01no482_l12.g1 PHD_FILE: MSMg01no482_l12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:41 2005
         (646 letters)



>mm_chr1_94718759_94719804
          Length = 1046

 Score = 1203 bits (622), Expect = 0.0
 Identities = 640/646 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcccctccctccttttgtattggggaaggatctccttaagttgcccaggcagctttgaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 962 agcccctccctccttttgtattggggaaggatctccttaagttgcccaggcagctttgaa 903

                                                                       
Query: 61  cttgcagcccttctgcccattctcctgagtgctgggattacaagcctgtactgtcagaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 902 cttgcagcccttctgcccattctcctgagtgctgggattacaagcctgtactgtcagaga 843

                                                                       
Query: 121 gtattcattttttccttcttgtaaaagctggtacggaagtatcagtctttacggctctgt 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 842 gtattcattttttccttcttgtaaaagctggtacggaagtatcagtctttacagctctgt 783

                                                                       
Query: 181 gcaaagggctcactccctgacagaaatggtgctgttggaagttaatgatgagtttatctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 gcaaagggctcactccctgacagaaatggtgctgttggaagttaatgatgagtttatctt 723

                                                                       
Query: 241 cattttgttctctccttcctgatgttatccagggccaacatccttcctcacccctcagga 300
           || | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 cagtctgtactctccttcctgatgttatccagggccaacatccttcctcacccctcagga 663

                                                                       
Query: 301 gccttgggtggtatttgaaatgagatgctgagggttccattgggctgctcactgggaggg 360
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 gccttgggtggtattcgaaatgagatgctgagggttccattgggctgctcactgggaggg 603

                                                                       
Query: 361 agagcgacagggagacacggagctgaagcttgcttgccaagctcctggaggggggcaggc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 agagcgacagggagacacggagctgaagcttgcttgccaagctcctggaggggggcaggc 543

                                                                       
Query: 421 cttagctcagtttccagtctgcagcccactgtgcatgggttgacctttcacacacctaca 480
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 542 cttagctcagtttccagtctgcagcccactgtgcatgggttgacctttcacacacccaca 483

                                                                       
Query: 481 gtactgccatattgccacagggacatggtttgagtccctcttcaaaactcacatggaaac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 gtactgccatattgccacagggacatggtttgagtccctcttcaaaactcacatggaaac 423

                                                                       
Query: 541 tcggtctccagggcagcagtgttggaactgaggctcagtaatggcattagtgacattatg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 tcggtctccagggcagcagtgttggaactgaggctcagtaatggcattagtgacattatg 363

                                                         
Query: 601 taaaggtcttgtgggatggggtgactgtctttctaagtcatgtgag 646
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 taaaggtcttgtgggatggggtgactgtctttctaagtcatgtgag 317


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 1046
Length adjustment: 10
Effective length of query: 636
Effective length of database: 1036
Effective search space:   658896
Effective search space used:   658896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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