BAC Information

Click to search

BAC

Clone NameMSMg01-482M18
Chromosome1 (Build37)
Map Location 71,991,019 - 71,991,600
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042809, Bard1, LOC667900, Abca12, LOC629101, Atic, Fn1, LOC100042814, Gabarapl2-ps1_652.1, LOC383528, LOC675667, EG667931
Downstream geneEG433319, LOC667937, LOC100043255, Mreg, Pecr, Tmem169, Xrcc5, March4, Smarcal1, Ankar, Rpl37a, Igfbp2, Igfbp5, LOC672187
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-482M18.T7 (MSMg01no482_m18.b1)MSMg01-482M18.TJ (MSMg01no482_m18.g1)
ACCAG562876AG562877
length758749
length of high quality
(start - end)
580 (74 - 653)582 (74 - 655)
definitionCHROMAT_FILE: MSMg01no482_m18.b1 PHD_FILE: MSMg01no482_m18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:03:47 2005CHROMAT_FILE: MSMg01no482_m18.g1 PHD_FILE: MSMg01no482_m18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:03:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTATXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAAGACGGGCCGCGGA
ATTCCAGGATTCCTCGAACAGTCCCAGCCAGTGGAAAAGCCTTGAAATCT
CTATTGAATTGGTTTCAAGACAAACAGAAGAAGGCTCCAGCGAGCTTTAG
GCCTAACTAGGGATGACTCTGAGTTAAGTCCATGGTTACTTTGTCCTGAT
ATTTTGCTATATTGCATGTGCATTCTCATTGAATGCAACATGGCTTCCCA
CTTAGAAGGTCAGACTGTGTCAGTAAGAGGAGAGAGAAAAGGAAGTAGTG
GAGTGAAAGGCTGCCTGATTTAAACAGGTGGCCTTGCAGGAGGACCCAGG
GCCTGGGAGTATATGAGAGCCAAGGAGGTTTGTCCGTGGGAGGACTTGTG
GTGGTAGGTTATCAGCACCATTATATTAGATTATTTAGGATGAGCTGGAG
CACAGCCATGGTGGCACATTCCTTTAATGCCAGCACTTGGGAGCCAGAGG
CAGGTAGATCTCTAAGTTTGAGGTCAGCCTGATCTTCAGAGCAAATTTCA
GGACAGCCAAGGCTACACAGAGAAACCCTATCTCAAAAAAAGCAACTGTA
ATGAGACAGAAGGCACAGCTGGGCACAAAGAGAGAAGGAGAGGCTTGGTC
CAATCTTAGATTTTAGGTAGGACTATGTTTACTAATGGAAAAGGGTCACT
TTCATCACCCATGTGTGTGGATAGCCTAAATGCCTACAGAAGATGGAATG
CAGCCTTT
CATGATAGGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAACAGGAAGTGTTATTTACAATGCTA
GTGGCTTGGCTCTCATAATATTCATTGATCTTACTCATTGGAGTCTATTC
CAATGTCTAATTGAGTGGATACATTTTGGTTTTGAAGTTGCTAAATCATT
TCCCTTCGTAATAAAAATTGGAAATGGAGAGTGTCTGTCATCACTTCTTA
ACCATGGAAGCTTTCTGCTTAATTTTGTGTGTGTATAGATAAGAACTAAG
GGTCAAAGAACTACCGTGGTTCTGTAAGAATTCCATCAATCATGGTCAAG
ACTAGATGCTAAGCAGTGCAGAAACTTGTGCCCAGTGACTCTTTCTTTTT
GTACATCTTGTCCTTGTGAATAATGTTTCCTGACAGGACCCCACCCTCCT
TTGCCCTGTGGGTCCAGTGCTCCGCTAATTCACAGATGAGCAGCTCAGAG
TCTCCATCTTGCTTTGCTGGAATTTTGTTTAGTCAGAACTTGTCAACCTA
GAATAGATGTGGAATGCAGGCTTAGTTTACAGAGGCCTGGTCTTTGGGAT
GTGAAGTAGTGGAAGAGGAATAGGAATAGGAATAGGAATAGGAATAGGAA
GAGGAAGATGAAGAGGTCTTTTCCCTTCTTTCTCTTTCCCTCTCTGTCCT
GTCTATTGTCATCCTTGTGTTTTCGTACATCTTTTTTACCTTTTTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no482_m18.g1 MSMg01no482_m18.g1 CHROMAT_FILE:
MSMg01no482_m18.g1 PHD_FILE: MSMg01no482_m18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:47 2005
         (582 letters)



>mm_chr1_71990819_71991800
          Length = 982

 Score = 1102 bits (570), Expect = 0.0
 Identities = 579/582 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caacaggaagtgttatttacaatgctagtggcttggctctcataatattcattgatctta 60
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 782 caacaggaagtgttatttacaatgcgagtggcttggctctcataatattcattgatctta 723

                                                                       
Query: 61  ctcattggagtctattccaatgtctaattgagtggatacattttggttttgaagttgcta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 ctcattggagtctattccaatgtctaattgagtggatacattttggttttgaagttgcta 663

                                                                       
Query: 121 aatcatttcccttcgtaataaaaattggaaatggagagtgtctgtcatcacttcttaacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 aatcatttcccttcgtaataaaaattggaaatggagagtgtctgtcatcacttcttaacc 603

                                                                       
Query: 181 atggaagctttctgcttaattttgtgtgtgtatagataagaactaagggtcaaagaacta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 atggaagctttctgcttaattttgtgtgtgtatagataagaactaagggtcaaagaacta 543

                                                                       
Query: 241 ccgtggttctgtaagaattccatcaatcatggtcaagactagatgctaagcagtgcagaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 ccgtggttctgtaagaattccatcaatcatggtcaagactagatgctaagcagtgcagaa 483

                                                                       
Query: 301 acttgtgcccagtgactctttctttttgtacatcttgtccttgtgaataatgtttcctga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 acttgtgcccagtgactctttctttttgtacatcttgtccttgtgaataatgtttcctga 423

                                                                       
Query: 361 caggaccccaccctcctttgccctgtgggtccagtgctccgctaattcacagatgagcag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 caggaccccaccctcctttgccctgtgggtccagtgctccgctaattcacagatgagcag 363

                                                                       
Query: 421 ctcagagtctccatcttgctttgctggaattttgtttagtcagaacttgtcaacctagaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 ctcagagtctccatcttgctttgctggaattttgtttagtcagaacttgtcaacctagaa 303

                                                                       
Query: 481 tagatgtggaatgcaggcttagtttacagaggcctggtctttgggatgtgaagtagtgga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 tagatgtggaatgcaggcttagtttacagaggcctggtctttgggatgtgaagtagtgga 243

                                                     
Query: 541 agaggaataggaataggaataggaataggaataggaagagga 582
           | ||||||||||||||||||||||||||||||||||| ||||
Sbjct: 242 ataggaataggaataggaataggaataggaataggaatagga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 15
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 982
Length adjustment: 10
Effective length of query: 572
Effective length of database: 972
Effective search space:   555984
Effective search space used:   555984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)