Query= MSMg01no482_n03.b1 MSMg01no482_n03.b1 CHROMAT_FILE:
MSMg01no482_n03.b1 PHD_FILE: MSMg01no482_n03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:48 2005
(505 letters)
>mm_chr1_29768550_29769454
Length = 905
Score = 891 bits (461), Expect = 0.0
Identities = 496/509 (97%), Gaps = 4/509 (0%)
Strand = Plus / Plus
Query: 1 ctaaggaggaactgggactgttggaacactggaggatggctttagctatgtcagaattca 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 200 ctaaggaggaactgggactgttggaacactggaggacggctttagctatgtcagaattca 259
Query: 61 atcttaagaggcacttatgatatgaaaatattgaaagagagcacgtggatccatacacta 120
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 atcttaaaaggcacttatgatatgaaaatattgaaagagagcacgtggatccatacacta 319
Query: 121 gactaacacgggaatggaacgcgggaatgaaaaattactgtatgggtagggaacgctaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gactaacacgggaatggaacgcgggaatgaaaaattactgtatgggtagggaacgctaga 379
Query: 181 ct-cagaaggagagcttccttgaagctcttttgcctcatgagtgacttttaagcctttcg 239
|| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ctccagaaggagagcttctttgaagctcttttgcctcatgagtgacttttaagcctttcg 439
Query: 240 gcctgttttgttgacttggctggagagcgtagcacgttcacatatgacttgtttctttac 299
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 440 gcctgtccagttgacttggctggagagcgtagcacattcacatatgacttgtttctttac 499
Query: 300 attaaattttatactcaaaagtatatgtatattttatctggctattcaatttctttcact 359
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 attaaatttcatactcaaaagtatatgtatattttatctggctattcaatttctttcact 559
Query: 360 tttgtagcgattcacccatttctttttatcacagcctttgtgtacttttcatgatgtagt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tttgtagcgattcacccatttctttttatcacagcctttgtgtacttttcatgatgtagt 619
Query: 420 tattatgctcaaaactcaactataaaagtgaataaaacatggcaaagtactctaacagct 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 620 tattatgctcaaaactcaactataaaagtgaataaaacatggcaaagtactctaacagtt 679
Query: 480 aaaaaattttcagaaaaaaa---ctccat 505
|||||||||||||||||||| ||||||
Sbjct: 680 aaaaaattttcagaaaaaaaaaactccat 708
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 905
Length adjustment: 10
Effective length of query: 495
Effective length of database: 895
Effective search space: 443025
Effective search space used: 443025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no482_n03.g1 MSMg01no482_n03.g1 CHROMAT_FILE:
MSMg01no482_n03.g1 PHD_FILE: MSMg01no482_n03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:48 2005
(609 letters)
>mm_chr1_29956167_29957175
Length = 1009
Score = 1154 bits (597), Expect = 0.0
Identities = 606/609 (99%)
Strand = Plus / Minus
Query: 1 actgagagtgtatctctacattgccccccccccaattttttggtcataattgtgatgtga 60
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 625 actgagagtgtatctctacattcccccccccccaattttttggtcataattgtgatgtga 566
Query: 61 ggctgattaaagatcatgacaggtataggatcttggaacccatggacttcagtacacagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ggctgattaaagatcatgacaggtataggatcttggaacccatggacttcagtacacagg 506
Query: 121 tacctcactaatatgtctcactaaaccccaactacttctctatatttctcctcatgacaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tacctcactaatatgtctcactaaaccccaactacttctctatatttctcctcatgacaa 446
Query: 181 agatgtctcctccctgaattcttctcagataaaaagatcacccacactcacccaactttg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agatgtctcctccctgaattcttctcagataaaaagatcacccacactcacccaactttg 386
Query: 241 tgtcctcttctctaggttaacacattccagttcaaggagagttttggggtagatgaggag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgtcctcttctctaggttaacacattccagttcaaggagagttttggggtagatgaggag 326
Query: 301 aggaagacataatatttggctgttgttttagcctaatcaaatgtccactttcatctattc 360
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aggaagacataacatttggctgttgttttagcctaatcaaatgtccactttcatctattc 266
Query: 361 tcatagaacagctatgtttttactgctatgaattagaacttctgtagattagagaactcc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcatagaacagctatgtttttactgctatgaattagaacttctgtagattagagaactcc 206
Query: 421 aatgaagacaccaaaatgaagtaatgccaccttaaggaatggaaagggttcttcttgaag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 aatgaagacaccaaaatgaagtaatgccaccttaaggaatggaaagggttcttcttgaag 146
Query: 481 aagacaaagaaagagaccaaatgtggattctctacttttcttcctgtgtcttctgtctgg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 aagacaaagaaagagaccaaatgtggattctctacttttcttcctgtgtcttctgtctgg 86
Query: 541 ttggtttctggttattggatggtagtccatttccatgaggtgtgtctgatttgtctctat 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 85 ttggtttctggttattggatggtagtccatttccatgaggtgtgtctgatttgtctttat 26
Query: 601 gtcatttaa 609
|||||||||
Sbjct: 25 gtcatttaa 17
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1009
Length adjustment: 10
Effective length of query: 599
Effective length of database: 999
Effective search space: 598401
Effective search space used: 598401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
