BAC Information

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BAC

Clone NameMSMg01-482P17
Chromosome1 (Build37)
Map Location 94,467,402 - 94,665,425
singlet/doubletdoublet
Overlap geneOlfr1413, Olfr1412, Olfr1411, Olfr1410, Olfr12, Myeov2, Otos
Upstream geneTwist2, Hdac4, LOC100040419, LOC665883, Ndufa10, Olfr1416, Olfr1415, Olfr1414
Downstream geneGpc1, Ankmy1, Dusp28, LOC100040511, Rnpepl1, Capn10, Gpr35, Aqp12, Kif1a, Agxt, 2310007B03Rik, E030010N08Rik, Sned1, Mterfd2, LOC665966, Pask, Ppp1r7, Tmem16g, Hdlbp, Sept2, Farp2, Stk25, Bok, Thap4, Atg4b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-482P17.T7 (MSMg01no482_p17.b1)MSMg01-482P17.TJ (MSMg01no482_p17.g1)
ACCAG563018AG563019
length737769
length of high quality
(start - end)
385 (72 - 456)343 (334 - 676)
definitionCHROMAT_FILE: MSMg01no482_p17.b1 PHD_FILE: MSMg01no482_p17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:04:01 2005CHROMAT_FILE: MSMg01no482_p17.g1 PHD_FILE: MSMg01no482_p17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:04:01 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,467,402 - 94,467,786)(94,665,083 - 94,665,425)
sequence
CACCCACCCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCTTTTTGCCCAAATTGTGTTGTGTTTTGCAAACCTGAAAC
AGCCAGAAAGGAACATAATTAGGCTCCTACTAAAATCAAGGGCATTGGTT
TGCACTCAACAGACTGTATAGCTCTAGTTGCCACTTAGGAGTGACCTGGC
CATCTACCCTAGGGAGGGCTCACTACATAGTTTTTCCCACACAAATGGAG
TGAGTTGGTGAGAAAATCAAGGGAATGGGCTGTGGCCAGTGGGCCACAAC
ATTGCCCTATAGAAGTGGCTACTGGAATGAGGGACAATGGATTCAGGTGG
TATGGAGTTTCTTTGCTATAATTCTGGTGGTCCCTTCAAGGTTTCCAGAG
GACTGCAAGGTTCAGACCAACCCATATAGACCAGTGACACAGAAGCAGAT
TGGTCACAGCCAGTCTTCCAACTCTGGAGCCCAGGGATTTAGGGTCCCAG
TTGTCAGCGGCCAGTATTACCTTAATTGGCCTTTGGAGGCCAAGAGCCTC
AGCACTATGAGGTGCAGAGCATCGCATCCAGCAGAGCGACCCCAAGGGCA
GGCAACTCCCCACAATGCCCTGCTAGGGTTGACATGAGAGCCGGCAAACG
AGGAAGCCCTTGCCTTCTTTCCTACAGAACCCAAAACTTGCCACACCCAG
AACCCTCACAGTCAGTTCCTTTACAGAGACCTGGTGC
AATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTTTCGAATTCCGTGTTCTTTGAGTGCCCTGGAAGTA
TATGAGTGAGACACCCTCTCCCTGGGGTATAGGAGCTGCCAATGGTTGAG
AGGGCATCTGGGAGGTTGACAAGGGTCTGTGCAGATCTCTCTCTCTCTCC
CCATATATGTGTATATATCCCCCAGGTCAGGGACTACAAGGGGAGCTCAA
ACAACCTAGCAAGTCCCCAGGTAGCTCTGAGGAGGCCAACCAAGGCTCTT
AGCCTCCAGCCTGAATCTGGGGCGCACTTCTGAAGCCTAGGAACAAGGGC
TACAGGAAAGATGAGCTTGCTCTCCCCTCTCATGCCCTCCTTAAGACTCA
AACAGGAACAAGAATATTTGGAAATGTCGCTCTGGGAGATGTCCATGTCT
CAAAGGGGGTTGGGGTGTCTTTGAGAATGACAGAGAATGTCAAAACCAGG
CTCAGCACCATTTTAGAAATCAGAAATGACAGCCAATAACAAGAAAGGAA
CAGCCTGTTCCCCATGAGGAGGGGATTAGGATGGCCCACTGGGTGGGACC
TGAGCTCAGATGGCTTCTGTTTAGCCACATGTGATGGTACCCAGGGAGGA
CCTGTGCTGTGACTTCAGGGGTATCAGCTTGGTGTTTTNGTTTGTTTGGT
ATTGGTGCTGCTGCTGTTGTTGTTGTTGATGATGATGATATTTTCTTTAT
TTACATTTCAAATTTTATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no482_p17.b1 MSMg01no482_p17.b1 CHROMAT_FILE:
MSMg01no482_p17.b1 PHD_FILE: MSMg01no482_p17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:04:01 2005
         (385 letters)



>mm_chr1_94467202_94467986
          Length = 785

 Score =  706 bits (365), Expect = 0.0
 Identities = 380/385 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aattgtgttgtgttttgcaaacctgaaacagccagaaaggaacataattaggctcctact 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 aattgtgttgtgttttgcaaacctgaaacagccagaaaggaacataatcaggctcctact 260

                                                                       
Query: 61  aaaatcaagggcattggtttgcactcaacagactgtatagctctagttgccacttaggag 120
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaatcaagggtattggtttgcactcaacagactgtatagctctagttgccacttaggag 320

                                                                       
Query: 121 tgacctggccatctaccctagggagggctcactacatagtttttcccacacaaatggagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgacctggccatctaccctagggagggctcactacatagtttttcccacacaaatggagt 380

                                                                       
Query: 181 gagttggtgagaaaatcaagggaatgggctgtggccagtgggccacaacattgccctata 240
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 381 gagttggtgagaaaatcaagggaatgggctgtggccagtggaccacaacattgccctata 440

                                                                       
Query: 241 gaagtggctactggaatgagggacaatggattcaggtggtatggagtttctttgctataa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaagtggctactggaatgagggacaatggattcaggtggtatggagtttctttgctataa 500

                                                                       
Query: 301 ttctggtggtcccttcaaggtttccagaggactgcaaggttcagaccaacccatatagac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 501 ttctggtggtcccttcaaggtttccagaggactgcaaggttcagaccaacccatagagac 560

                                    
Query: 361 cagtgacacagaagcagattggtca 385
           |||| ||||||||||||||||||||
Sbjct: 561 cagtaacacagaagcagattggtca 585


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 385
Length of database: 785
Length adjustment: 9
Effective length of query: 376
Effective length of database: 776
Effective search space:   291776
Effective search space used:   291776
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no482_p17.g1 MSMg01no482_p17.g1 CHROMAT_FILE:
MSMg01no482_p17.g1 PHD_FILE: MSMg01no482_p17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:04:01 2005
         (343 letters)



>mm_chr1_94664883_94665625
          Length = 743

 Score =  648 bits (335), Expect = 0.0
 Identities = 341/343 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcctaggaacaagggctacaggaaagatgagcttgctctcccctctcatgccctcctta 60
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 543 agcctaggaacaagggctacaggaaagatgagcttgctctcacctctcatgccctcctta 484

                                                                       
Query: 61  agactcaaacaggaacaagaatatttggaaatgtcgctctgggagatgtccatgtctcaa 120
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 483 agactcaaacaggaacaagaacatttggaaatgtcgctctgggagatgtccatgtctcaa 424

                                                                       
Query: 121 agggggttggggtgtctttgagaatgacagagaatgtcaaaaccaggctcagcaccattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 agggggttggggtgtctttgagaatgacagagaatgtcaaaaccaggctcagcaccattt 364

                                                                       
Query: 181 tagaaatcagaaatgacagccaataacaagaaaggaacagcctgttccccatgaggaggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 tagaaatcagaaatgacagccaataacaagaaaggaacagcctgttccccatgaggaggg 304

                                                                       
Query: 241 gattaggatggcccactgggtgggacctgagctcagatggcttctgtttagccacatgtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 gattaggatggcccactgggtgggacctgagctcagatggcttctgtttagccacatgtg 244

                                                      
Query: 301 atggtacccagggaggacctgtgctgtgacttcaggggtatca 343
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 atggtacccagggaggacctgtgctgtgacttcaggggtatca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 743
Length adjustment: 9
Effective length of query: 334
Effective length of database: 734
Effective search space:   245156
Effective search space used:   245156
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)