NGGGAAAATCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCTGGGAGTGCATCCTTTATGAATCACCATCCATGATG
TAATGGGCATTTCAATGGCACAGCTGCCTATGAATTATCCATGTTTCAAC
CTTTCCCCTGTATTCTCTTAAGTAATTCCAATAAACAAAGTGATTCACTA
TGCCAGATAATGATACATTTTTTTTCACTTGGAACAAATTGTTCTTTTTT
TGGTCTGTGCTATGTACATGGTTAAATCTCCTCAGAAAAGTCACACAGCA
GTGTGGAAATATATTTTAAGGAATAAGGCATCTTAAAAACCAGTTGATAG
AAGAGCAGAAGGTTTTTAACAACCTTAAGAGCTATGCAAATTGAATTCTT
CTTGAACAAAATTCTTCCATTCAGACTTTGAAAATGTATAATTATTTTGT
TAGATATTCATTGAAATTTTAAATATTCATTTGGGCCTAAAAGGAAAAAT
TCACATGTTGTCATTACAAGTAGCAATCAAACTGGTGTCCTTCTTGAAAA
TAGGTAATTAACTGGGAAAGGGGATAAAGTATAAAATCCTTGTGAAAGAA
AACATTATTTTCTTTAAAAGGCTATTTTATATACAATAATTAATAAGTAC
ATTTAAAATTATCTTTCCTATGTGAATCACCAATATTTCATTTCTTTTAC
TGGACAATAAATCTATAAAAGTACATTATGTAAAATTTTTATGTGA

NCCCTTCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTACCCC
ATATTTAAATGGAGTTATTTGAATTTCTGGAGTCCACCTTCTTGAGTTCT
TTGTATATATTGAATATTAGTCCCCTATCAGATTTAGGATTGGTAAAAAT
TCTTTTCCAATCTGTTGGTGGCTTTTTTTTTTTGTCTTATTGATAGTGTC
TTTTGCCTCAAAGAAACTGCAATTTTATGAGGTCCCATTTGTCAATTCTT
GATCTTAGAGAACACGCCATTGCTGTTATTTTTTTTGTTTGTTTGTTTGT
TTGTTTTTTTGTTTTTGTTTTTGTTTTGTTTTTAGGAATTTTTCCCCAGT
GCCCATATCTTAGTGGCTTTTCCCCACTTTCTCCTTTATTAATTTCAGTG
TCTCTGGTTTCATGTGGAGGTCTTTGATCCACTTAGACTTGAGCTTTGTA
CAAGGAGATAAGAATGGATCAATTCACATCCTTCTACATGGTAACTTCCA
GTTGTGCCAGCACCATTTGTTGGAAATGCTGTCTTTTTTCTACTGGATGG
TTTTAGCTCCCTTGTAAATGATCAAGTGACCATAGCTGTGTGGATTCATT
TCTGGGTCTTCAATTCTATTCCATTGATCTACCTGTCTGTCCCTGGGACA
TTACCATGCAGTTTTTATCACAATTGTTCTCTAGTACAGCTCG

Query= MSMg01no483_c01.b1 MSMg01no483_c01.b1 CHROMAT_FILE:
MSMg01no483_c01.b1 PHD_FILE: MSMg01no483_c01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:04:12 2005
         (692 letters)



>mm_chr1_113443215_113444306
          Length = 1092

 Score = 1284 bits (664), Expect = 0.0
 Identities = 682/688 (99%)
 Strand = Plus / Minus

                                                                        
Query: 5    gaattctgggagtgcatcctttatgaatcaccatccatgatgtaatgggcatttcaatgg 64
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1034 gaattctgggagtgcatcctttatgaatcaccatccatgatgtaatgggcatttcaatgg 975

                                                                        
Query: 65   cacagctgcctatgaattatccatgtttcaacctttcccctgtattctcttaagtaattc 124
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 974  cacagctgcctatgaattatccatgtttcaacctttcccctgtattctcttaagtaattc 915

                                                                        
Query: 125  caataaacaaagtgattcactatgccagataatgatacattttttttcacttggaacaaa 184
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 914  caataaacaaagtgattcactatgccagataatgatacattttttttcacttggtacaaa 855

                                                                        
Query: 185  ttgttctttttttggtctgtgctatgtacatggttaaatctcctcagaaaagtcacacag 244
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 854  ttgttctttttttggtctgtgctatgtacatggttaaatctcctcagaaaagtcacacag 795

                                                                        
Query: 245  cagtgtggaaatatattttaaggaataaggcatcttaaaaaccagttgatagaagagcag 304
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794  cagtgtggaaatatattttaaggaataaggcatcttaaaaaccagttgatagaagagcag 735

                                                                        
Query: 305  aaggtttttaacaaccttaagagctatgcaaattgaattcttcttgaacaaaattcttcc 364
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734  aaggtttttaacaaccttaagagctatgcaaattgaattcttcttgaacaaaattcttcc 675

                                                                        
Query: 365  attcagactttgaaaatgtataattattttgttagatattcattgaaattttaaatattc 424
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674  attcagactttgaaaatgtataattattttgttagatattcattgaaattttaaatattc 615

                                                                        
Query: 425  atttgggcctaaaaggaaaaattcacatgttgtcattacaagtagcaatcaaactggtgt 484
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 614  atttgggcctaaaaggaaaaattcacatgttgtcattacaagtagcaatcaaactggttt 555

                                                                        
Query: 485  ccttcttgaaaataggtaattaactgggaaaggggataaagtataaaatccttgtgaaag 544
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 554  cctccttgaaaataggtaattaactgggaaaggggataaagtataaaatccttgtgaaat 495

                                                                        
Query: 545  aaaacattattttctttaaaaggctattttatatacaataattaataagtacatttaaaa 604
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494  aaaacattattttctttaaaaggctattttatatacaataattaataagtacatttaaaa 435

                                                                        
Query: 605  ttatctttcctatgtgaatcaccaatatttcatttcttttactggacaataaatctataa 664
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 434  ttatctttcctatgtgaatcaccaatatttcatttcttttactgaacaataaatctataa 375

                                        
Query: 665  aagtacattatgtaaaatttttatgtga 692
            |||||||||||||||||| |||||||||
Sbjct: 374  aagtacattatgtaaaatgtttatgtga 347


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 692
Length of database: 1092
Length adjustment: 10
Effective length of query: 682
Effective length of database: 1082
Effective search space:   737924
Effective search space used:   737924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)