BAC Information

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BAC

Clone NameMSMg01-483D05
Chromosome1 (Build37)
Map Location 73,255,710 - 73,256,310
singlet/doubletsinglet
Overlap genenone
Upstream geneMreg, Pecr, Tmem169, Xrcc5, March4, Smarcal1, Ankar, Rpl37a, Igfbp2, Igfbp5, LOC672187, LOC100042860, Tnp1, 1700027A15Rik
Downstream genePinc, LOC672208, LOC100043291, Tns1, Rufy4, Il8rb, Il8ra
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-483D05.T7 (MSMg01no483_d05.b1)MSMg01-483D05.TJ (MSMg01no483_d05.g1)
ACCAG563184AG563185
length750826
length of high quality
(start - end)
603 (52 - 654)113 (84 - 196)
definitionCHROMAT_FILE: MSMg01no483_d05.b1 PHD_FILE: MSMg01no483_d05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:04:19 2005CHROMAT_FILE: MSMg01no483_d05.g1 PHD_FILE: MSMg01no483_d05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:04:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCAATATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTGTCTGTCATGTTCCATGGTGATCAGCTTAAATGTGAAC
ATTTGATTGTGGATCTGGTTAAACCCAAAGGGCCACAGGAAAGAGCTGAC
NAAAAAAAAAAAAAAAAAAAAAAAGGACATTTCTAGGTCATTGTCCATTG
CTAGGTTTGGCTTGGCAGCTTGACTTGCTCCACTCTGAAGTTCAGAAAGG
GTAGACTAGGAAATGAAGAAGGAAAAGAGAGAGAGGAGAGGGAATTTTTT
TTTTAACTTTTCAAGTTCATGATGTTTCAGCTGTAGACACAGCTGAGACC
AAAGCTTTGACTCTGGCTCATTGCCATTCTCATCTAGATAAAAAACTTAT
TTTATCAGGAGTTAAAAACAAAGGCTACTTTTAGATCGCATACTCTGAAT
CTGTCCCTACCCTGTGAGATTTAGGGGACTCTTTGTAAAGTCCCTGCCCG
TTGATTCGGCATAGAGAGCAGTACATTGCAGTGATTCAGGTTTCCTGAAT
TTGAAATCTGACTTGTTTCCCTAACTGGACATCTTCAGTATCCCTGGGCC
TAAGATTTGTAAACTGCGAATGGAAATTAAAGTGGCATCCCTATCCCAGG
GCTGTGGTGATAGCTGAATTGTATTGAAGCACACAGTTACCCAGAAGCAT
GTGAGCTGTATAGCTGGTGCTCAGTAACTAGCAGCACTACCTTACAGTCG

AAAGGCCCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGGGGGGATAATGGTAT
GAATAGAAAAAAAGCTAGTGTTCCCCCCTAAAATTCAAACAAGAAGAAGG
AGAAGGGGAGGAGAAAGAGGAGGGGGAGAAGAGGGAAGAGGAGGATTATC
CTTTCTTTTTTTTTTTTTCCCTTTTCCTTTTTCCTTTTCTTTTTTTTTTT
TTTTTCTTTTTCTTTTTTCCCTTTTTTCCTTTTTTTTTTTCCTTTTTTTT
TTTTCTCCTCTCTTCTCTTTTTTTTTTTTTCTTTTCTCTTTCTTTTCTTC
CTTCCCTTTTTTCTTTTTTCCTCTTTTTTTCTTTCCCCCCTCTCCCCCCC
TTTTTTTCTTTTTTTTGTTTTTCCCCCCCCTTNCTTCTCTCCTCTTTTTT
TTCTTTCCCCTTTTTTTTCTTTCTTTTCTCTTCTCCCTTCGCTTTTTTTC
TTTTTTTTTTTTCTTCTGCTCTCCTCTTCTCTCTTTTTTTTTTTCTGTCT
CTCTTTCCTTCTCTCTCTTTTTTTTTTTTCTTTTTTTTTTCCCTCTTTTT
TCTTCTTCTCCTCTTTTTTTTCTCTTTTTTTTCCTCTTCTTCTTCTTTTT
TTCTTTTTTGTCCCTCTTTCTCTTCGTTTTTTTCTCTCCTTCTTCCCCTT
TTTTCCTTTCTTTTCCCCTCTTCCCCTGCTCTCTTTCTTCGTTTCTTTGC
CCCCTCTCCTTTTTTGTCGTTTTCTTTCTCCTTTTCCTCTTTTTTTTTTT
CTTTTCTTTCTTTTCTCTTCTCTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no483_d05.b1 MSMg01no483_d05.b1 CHROMAT_FILE:
MSMg01no483_d05.b1 PHD_FILE: MSMg01no483_d05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:04:19 2005
         (603 letters)



>mm_chr1_73255508_73256510
          Length = 1003

 Score = 1125 bits (582), Expect = 0.0
 Identities = 596/601 (99%), Gaps = 1/601 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctgtctgtcatgttccatggtgatcagcttaaatgtgaacatttgattgtggat 63
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ggaattctgtctggaatgttccatggtgatcagcttaaatgtgaacatttgattgtggat 262

                                                                       
Query: 64  ctggttaaacccaaagggccacaggaaagagctgacnaaaaaaaaaaaaaaaaaaaaaaa 123
           ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct: 263 ctggttaaacccaaagggctacaggaaagagctgacaaaaaaaaaaaaaaaaaaaaaaaa 322

                                                                       
Query: 124 -ggacatttctaggtcattgtccattgctaggtttggcttggcagcttgacttgctccac 182
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aggacatttctaggtcattgtccattgctaggtttggcttggcagcttgacttgctccac 382

                                                                       
Query: 183 tctgaagttcagaaagggtagactaggaaatgaagaaggaaaagagagagaggagaggga 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tctgaagttcagaaagggtagactaggaaatgaagaaggaaaagagagagaggagaggga 442

                                                                       
Query: 243 attttttttttaacttttcaagttcatgatgtttcagctgtagacacagctgagaccaaa 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 attttttttttaacttttcaagttcatgatgtttcagctgtagacacagctgagaccaaa 502

                                                                       
Query: 303 gctttgactctggctcattgccattctcatctagataaaaaacttattttatcaggagtt 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gctttgactctggctcattgccattctcatctagataaaaaacttattttatcaggagtt 562

                                                                       
Query: 363 aaaaacaaaggctacttttagatcgcatactctgaatctgtccctaccctgtgagattta 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 aaaaacaaaggctacttttagatcgcatactctgaatctgtccctaccctgtgagattta 622

                                                                       
Query: 423 ggggactctttgtaaagtccctgcccgttgattcggcatagagagcagtacattgcagtg 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ggggactctttgtaaagtccctgcccgttgattcggcatagagagcagtacattgcagtg 682

                                                                       
Query: 483 attcaggtttcctgaatttgaaatctgacttgtttccctaactggacatcttcagtatcc 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 attcaggtttcctgaatttgaaatctgacttgtttccctaactggacatcttcagtatcc 742

                                                                       
Query: 543 ctgggcctaagatttgtaaactgcgaatggaaattaaagtggcatccctatcccagggct 602
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 ctgggcctaagatttgtaaactgcgaatggaaattaaagtggcatccctatcccagggct 802

            
Query: 603 g 603
           |
Sbjct: 803 g 803


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1003
Length adjustment: 10
Effective length of query: 593
Effective length of database: 993
Effective search space:   588849
Effective search space used:   588849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)