Query= MSMg01no483_e17.b1 MSMg01no483_e17.b1 CHROMAT_FILE:
MSMg01no483_e17.b1 PHD_FILE: MSMg01no483_e17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:04:27 2005
(592 letters)
>mm_chr1_117845569_117846560
Length = 992
Score = 971 bits (502), Expect = 0.0
Identities = 568/592 (95%), Gaps = 6/592 (1%)
Strand = Plus / Minus
Query: 4 ggaattcagtcag--ttcaatt-ggagaaaaaagaagttctggattcaaggtcttggttt 60
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct: 792 ggaattcagtcagaa---aattaggagaaaaaagaagttctggattcaaggtcttggttt 736
Query: 61 acatttatttttctttcaccataccctgtagcttgtgagcctttcttctggctcctaggt 120
||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||
Sbjct: 735 gcatttatttttctttcaccatcccctgtagcttgtgagcctttcttctggcccctaagt 676
Query: 121 tcccaagagaaattgttatgtactctttttctccatcgtctctctcacatcttactatgt 180
|||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 675 tcccaaaagaaattgttatgtactctttttctcaatcatctctctcacatcttactatgt 616
Query: 181 ttggcttgacagatgatgagactaactgtggctgtctttgatgcaaccctttccacttct 240
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 615 ttggcttgacagatgatgagactaactgtggctgtctttgatgcaatcctttccacttct 556
Query: 241 ccatccaagatattacatgtgatatttttcttctggtttcaacatggtcaccatcttgga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 ccatccaagatattacatgtgatatttttcttctggtttcaacatggtcaccatcttgga 496
Query: 301 gcagacaatgccttggccaagtattcatggcatgcaatgtaattgccaggcctatagtca 360
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 gcagacaatgccttggcctagtattcatggcatgcaatgtaattgccaggcctatagtca 436
Query: 361 tggatctactgacgctctctcattaaatgagaggatgagggtcattagaccaattccaat 420
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct: 435 tggatctactgacgctctctcattaaaggaaaggatgagggtcattagaccaattccaat 376
Query: 421 tccagttgactgccagtccaattccctctgactttctccaattgcaagttcttttgaaag 480
|||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct: 375 tccaattgactgccagtccaattccctctgactttctccagttgcaagtgcttttgaaag 316
Query: 481 atgctagagaatataagacttgaaaggttaactaaaagatgcacttcatgatgatacttc 540
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 315 atgctagagaatataagacgtgaaaggttaactaaaagatgcacttaatgatgatacttc 256
Query: 541 ctggagatcaccatccatgactacatggagcttatagtgattatgttgtctg 592
|||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 255 ctggagatcatcatccatgactacatggagcttacagtgattatgttgtctg 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 992
Length adjustment: 10
Effective length of query: 582
Effective length of database: 982
Effective search space: 571524
Effective search space used: 571524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no483_e17.g1 MSMg01no483_e17.g1 CHROMAT_FILE:
MSMg01no483_e17.g1 PHD_FILE: MSMg01no483_e17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:04:27 2005
(544 letters)
>mm_chr1_117690450_117691396
Length = 947
Score = 917 bits (474), Expect = 0.0
Identities = 521/546 (95%), Gaps = 18/546 (3%)
Strand = Plus / Plus
Query: 2 cagcatcatggctacttgcctgctaccttgctgagcaccatgatggtcatggactgtatt 61
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 217 cagcatcatggctacttgcctgctaccttgctgagcaccacgatggtcatggactgtatc 276
Query: 62 actctggaactgtgagcctcaaattcaaaggcttgttttataagttgcctaggtcatgat 121
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 277 actctggaactgtgagcctcaaattcaaaggcttgttttataagttgcctagatcatgat 336
Query: 122 gttttttttcacatcaattgagaagtaacttaaaaaactacctacatctttctgggaaga 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 gttttttttcacatcaattgagaagtaacttaaaaaactacctacatctttctgggaaga 396
Query: 182 attttctatattagagatatggaagcttattactgttagaaaccccccacaacctccccc 241
||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 397 attttctatattagagatatggaagcttattactgttagaa---------aa------cc 441
Query: 242 ccccacacacacacatgtaggaacactcactaatgaccttttcttctatctaaatttaaa 301
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ccccacacacacatatgcaggaacactcactaatgaccttttcttctatctaaatttaaa 501
Query: 302 aaccttggtgagactcctctgcaagttttaactgctacatcagctagagactgacccttt 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 aaccttggtgagactcctctgcaagttttaactgctacatcagctagagactgacccttt 561
Query: 362 aaataaagattcaacactgcaaaatcatgactaaaaaagcccaccacttcctgaccagct 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 aaataaagattcaacactgcaaaatcatgactaaaaaagcccaccacttcctgaccagct 621
Query: 422 ggtctgctggcacaagggaagacatcttgccttgcttgcttccacatttgatttttttt- 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 ggtctgctggcacaagggaagacatcttgccttgcttgcttccacatttgattttttttt 681
Query: 481 -ctgatatatttcagaggcattctctttttc-caatatgtttgtttcctcaaagtcagcg 538
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct: 682 tctgatatatttcagaggcattctctttttttcaatatgtttgtttcctcaaagtcagtg 741
Query: 539 cagctg 544
||||||
Sbjct: 742 cagctg 747
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 947
Length adjustment: 10
Effective length of query: 534
Effective length of database: 937
Effective search space: 500358
Effective search space used: 500358
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
