Query= MSMg01no483_e21.b1 MSMg01no483_e21.b1 CHROMAT_FILE:
MSMg01no483_e21.b1 PHD_FILE: MSMg01no483_e21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:04:28 2005
(487 letters)
>mm_chr1_53942517_53943402
Length = 886
Score = 911 bits (471), Expect = 0.0
Identities = 480/483 (99%), Gaps = 1/483 (0%)
Strand = Plus / Minus
Query: 5 gaattcagtcactctaatcttggttctctgaattatatttatcacctatttctgattatt 64
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 gaattcagacactctaatcttggttctctgaattatatttatcacctatttctgattatt 627
Query: 65 agtaatagaaataagcaaaatgatcttacagatacagattcatttcctgacagagaggta 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 agtaatagaaataagcaaaatgatcttacagatacagattcatttcctgacagagaggta 567
Query: 125 ataatggtactcctaataaatattaatgaacaattttgacattactatagccatggtaaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 ataatggtactcctaataaatattaatgaacaattttgacattactatagccatggtaaa 507
Query: 185 taggctgtagattattttaaaatatgttttgcctatagttgatttctgttgcaattgatc 244
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 taggctgta-attattttaaaatatgttttgcctatagttgatttctgttgcaattgatc 448
Query: 245 atacagtggatttgcaatggagctgtttgcatgtggtgtttatttccacatagagttata 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 atacagtggatttgcaatggagctgtttgcatgtggtgtttatttccacatagagttata 388
Query: 305 gaatggcttatcattatcactgtggctgtccctgttactggtgacaattgtttttagagt 364
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 387 gaatggcttatcattatcactgtggctgtccctgttactggtgactattgtttttagagt 328
Query: 365 tctctgggttatctctttacctctctggctagctaatattcacccagaagatggtttgcc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 tctctgggttatctctttacctctctggctagctaatattcacccagaagatggtttgcc 268
Query: 425 atttcttatggttgtcatttctatgcagttgtctgctgttggaattttgttggtggtggt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 atttcttatggttgtcatttctatgcagttgtctgctgttggaattttgttggtggtggt 208
Query: 485 agg 487
|||
Sbjct: 207 agg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 886
Length adjustment: 10
Effective length of query: 477
Effective length of database: 876
Effective search space: 417852
Effective search space used: 417852
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no483_e21.g1 MSMg01no483_e21.g1 CHROMAT_FILE:
MSMg01no483_e21.g1 PHD_FILE: MSMg01no483_e21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:04:28 2005
(522 letters)
>mm_chr1_53777278_53778199
Length = 922
Score = 986 bits (510), Expect = 0.0
Identities = 519/522 (99%), Gaps = 1/522 (0%)
Strand = Plus / Plus
Query: 1 tgacaaatttgggggatccttaatgagcaatatcatgtcatccaccaataaggatttttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 tgacaaatttgggggatccttaatgagcaatatcatgtcatccaccaataaggatttttt 261
Query: 61 taaacttattttcttatctgtatccctttaaatttccttctcttgtcttactatgccagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 taaacttattttcttatctgtatccctttaaatttccttctcttgtcttactatgccagc 321
Query: 121 ttgtgcttccagcacaatgttgagaaggagtggggatagcagacagtcctgactcattcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ttgtgcttccagcacaatgttgagaaggagtggggatagcagacagtcctgactcattcc 381
Query: 181 tggcttcagtgagattgctccaagatttttattcccaatttgggatgttgttggctgtgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tggcttcagtgagattgctccaagatttttattcccaatttgggatgttgttggctgtgg 441
Query: 241 atttcttatatagagattttattaggttgcggtatgttctctttagccctacattctgta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 atttcttatatagagattttattaggttgcggtatgttctctttagccctacattctgta 501
Query: 301 ggacttttatcatgaaggtagattggaatttgccaaagggtttttgttttttttcttcat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 502 ggacttttatcatgaaggtagattggaatttgccaaagggtttttgttttttt-cttcat 560
Query: 361 ctattaagattgtcacatgatctttgaaagcctttgaccggtatttccttgaatctttat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctattaagattgtcacatgatctttgaaagcctttgaccggtatttccttgaatctttat 620
Query: 421 ctgatccaacgtgttcctactatttaaggtagtttgactgcttgtgtctcacaggtcacc 480
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 621 ctgatccaacgtgttcctactatttacggtagtttgactgcttgtgtctcacaggtcacc 680
Query: 481 aagattctatttgcttttccttttcttgtgagtcatggtctc 522
||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 681 aagattctatttgcttttctttttcttgtgagtcatggtctc 722
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 922
Length adjustment: 10
Effective length of query: 512
Effective length of database: 912
Effective search space: 466944
Effective search space used: 466944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
