BAC Information

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BAC

Clone NameMSMg01-483F14
Chromosome1 (Build37)
Map Location 178,702,074 - 178,842,823
singlet/doubletdoublet
Overlap geneCep170, Sdccag8, LOC666235
Upstream geneWdr64, Exo1, Gm104, Pld5, B020018G12Rik
Downstream geneAkt3, Zfp238, EG631449, LOC100040770, 1700016C15Rik, Adss, EG631584
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-483F14.T7 (MSMg01no483_f14.b1)MSMg01-483F14.TJ (MSMg01no483_f14.g1)
ACCAG563298AG563299
length776786
length of high quality
(start - end)		574 (51 - 624)533 (81 - 613)
definitionCHROMAT_FILE: MSMg01no483_f14.b1 PHD_FILE: MSMg01no483_f14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:04:31 2005CHROMAT_FILE: MSMg01no483_f14.g1 PHD_FILE: MSMg01no483_f14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:04:31 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(178,842,341 - 178,842,823)(178,702,074 - 178,702,584)
sequence
NNNNCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTGTTTTCACCTTATAAAATTAGTTTTACAGTCTTGTAAC
TTTAAAAATGAAGATGTACTATATTAGTAATTTTAAAATTACATAGATTA
AGAATGAATAGAGAGTTTCATTAAGAAAATTCCTATTGTATATTTCTCAC
AAATTTCTAGGAGAGAAATACAAAAAGGTTATATTGCCTTAAACCCAAAG
AATAATTTTCCTGGAAAGCAAATGAAGCAGACAGAGCTTATTAAGCCTGC
TCCCAAATATTATTGAATTTAAAATTATTTTGCAGCTGGGGATGCTAGAA
CACTCTGGTCCTCCCAGCACTTAGGAGGGTATGTATATGTCAGGGGCCTG
GCAGGGCTACGGAATACACTCAGCTAGCCAGGATTACAGAAACCCTGTCT
CAAATGTTCTTAAGTGCCCTGTCATCTTTAATATAGGGTGACTTCTTTGT
GTTACAGAAGGTAAAATGGAATAAAAGGACCAAAATACAAGAGAGTAGGG
AGACTAGAATTTAAAAATCCTTGCACAGCCAGAAGGAAGAGCACGTGGTT
TTGAGGCTGACATAATTTGACAATGTCAATTGTGATTTGGAAAGCAGTGG
TCAAATTAATACAATATGTTTTGAAAAGGAAAGCAGTGCATGATGCTGAA
TGGGTAAGCAGAAACATCTGGATAANGACAGACTTGCTAGCCACTCAGTA
GTGACCAATCTACAGTCGAAAGACTT

NNNNCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTTTGTTAAGGTCCAAAAG
AATAAACACTAATAGTTTCTATACTGTTAGACCTGTAAGTAAGACTGTAA
ATTTACTTCAGAATTTTTAATGAAAACACAAGTTTCATTGTTACTAATCT
GTTGGAGATTAGTCATTTTCTTTCTTATAAAGCTATTAGTCCTTCTAGTG
CTTCTGTGTATTACCCAAGGGGAAAAGTTGAGGCATGATTAGATCAGAGT
TGTAATCTTATGTTTCTATTCAGTAAAAAGACCACGCAGAAATGCTCAGC
ATACTTCTTAACCCCTCTGCTGATCTCTAACTATCCTAAATACAGACATT
CACTTGCTATCCCTCAGGTTAGCTTGGCTGTACTTTGTGAGAAGTTGGTA
TAAAGCAAGCTGCAACTCTCCTAAAGGGTGAAAGTGTATGGGCTTTGTGA
ACATTATTTTCCTCACTGTCCCAAAGCGCATGCACTTTACTCTTGTAGGA
GCAAGGCATCTATCTATCTATCTATCTATCTATCTATCTATATCTCATAT
CAATTGATTTTCACAGTTGCTCAAAGTCCAAGTTTTAATAAATTGTTACT
AACTACTATCTACCTCCGTTTTATCAAAATCTGAATGTATCCGTTTTATA
AACTAATGGGAAACTTATTTATTGANTACAGCTCTGAATTTTGTAGAAAG
TTATGTCATTTGTAAATAATATGAAGAATAAATAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no483_f14.b1 MSMg01no483_f14.b1 CHROMAT_FILE:
MSMg01no483_f14.b1 PHD_FILE: MSMg01no483_f14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:04:31 2005
         (574 letters)



>mm_chr1_178842341_178843314
          Length = 974

 Score =  880 bits (455), Expect = 0.0
 Identities = 476/483 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttgttttcaccttataaaattagttttacagtcttgtaactttaaaaatgaaga 64
           ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 gaattcttgttgtgaccttataaaattagttttacagtcttgtaactttaaaaatgaaga 424

                                                                       
Query: 65  tgtactatattagtaattttaaaattacatagattaagaatgaatagagagtttcattaa 124
           |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct: 423 tgtactatattagtaatttttaaattacatagattaagaacgaatagagagtttcattaa 364

                                                                       
Query: 125 gaaaattcctattgtatatttctcacaaatttctaggagagaaatacaaaaaggttatat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 gaaaattcctattgtatatttctcacaaatttctaggagagaaatacaaaaaggttatat 304

                                                                       
Query: 185 tgccttaaacccaaagaataattttcctggaaagcaaatgaagcagacagagcttattaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 tgccttaaacccaaagaataattttcctggaaagcaaatgaagcagacagagcttattaa 244

                                                                       
Query: 245 gcctgctcccaaatattattgaatttaaaattattttgcagctggggatgctagaacact 304
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 243 gcctgctcccaaatattattgaatttaaaattattttgcagctggagatgctagaacact 184

                                                                       
Query: 305 ctggtcctcccagcacttaggagggtatgtatatgtcaggggcctggcagggctacggaa 364
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 183 ctggtcctcccagcacttaggagggtatgtatatgtcaggggcctggcagggctacagaa 124

                                                                       
Query: 365 tacactcagctagccaggattacagaaaccctgtctcaaatgttcttaagtgccctgtca 424
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 tagactcagctagccaggattacagaaaccctgtctcaaatgttcttaagtgccctgtca 64

                                                                       
Query: 425 tctttaatatagggtgacttctttgtgttacagaaggtaaaatggaataaaaggaccaaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63  tctttaatatagggtgacttctttgtgttacagaaggtaaaatggaataaaaggaccaaa 4

              
Query: 485 ata 487
           |||
Sbjct: 3   ata 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 974
Length adjustment: 10
Effective length of query: 564
Effective length of database: 964
Effective search space:   543696
Effective search space used:   543696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no483_f14.g1 MSMg01no483_f14.g1 CHROMAT_FILE:
MSMg01no483_f14.g1 PHD_FILE: MSMg01no483_f14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:04:31 2005
         (533 letters)



>mm_chr1_178701874_178702806
          Length = 933

 Score =  988 bits (511), Expect = 0.0
 Identities = 511/511 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtttgttaaggtccaaaagaataaacactaatagtttctatactgttagacctgtaagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtttgttaaggtccaaaagaataaacactaatagtttctatactgttagacctgtaagt 260

                                                                       
Query: 61  aagactgtaaatttacttcagaatttttaatgaaaacacaagtttcattgttactaatct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagactgtaaatttacttcagaatttttaatgaaaacacaagtttcattgttactaatct 320

                                                                       
Query: 121 gttggagattagtcattttctttcttataaagctattagtccttctagtgcttctgtgta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttggagattagtcattttctttcttataaagctattagtccttctagtgcttctgtgta 380

                                                                       
Query: 181 ttacccaaggggaaaagttgaggcatgattagatcagagttgtaatcttatgtttctatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttacccaaggggaaaagttgaggcatgattagatcagagttgtaatcttatgtttctatt 440

                                                                       
Query: 241 cagtaaaaagaccacgcagaaatgctcagcatacttcttaacccctctgctgatctctaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagtaaaaagaccacgcagaaatgctcagcatacttcttaacccctctgctgatctctaa 500

                                                                       
Query: 301 ctatcctaaatacagacattcacttgctatccctcaggttagcttggctgtactttgtga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctatcctaaatacagacattcacttgctatccctcaggttagcttggctgtactttgtga 560

                                                                       
Query: 361 gaagttggtataaagcaagctgcaactctcctaaagggtgaaagtgtatgggctttgtga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaagttggtataaagcaagctgcaactctcctaaagggtgaaagtgtatgggctttgtga 620

                                                                       
Query: 421 acattattttcctcactgtcccaaagcgcatgcactttactcttgtaggagcaaggcatc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acattattttcctcactgtcccaaagcgcatgcactttactcttgtaggagcaaggcatc 680

                                          
Query: 481 tatctatctatctatctatctatctatctat 511
           |||||||||||||||||||||||||||||||
Sbjct: 681 tatctatctatctatctatctatctatctat 711


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 933
Length adjustment: 10
Effective length of query: 523
Effective length of database: 923
Effective search space:   482729
Effective search space used:   482729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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