BAC Information

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BAC

Clone NameMSMg01-484B19
Chromosome1 (Build37)
Map Location 90,147,725 - 90,147,959
singlet/doubletsinglet
Overlap geneLOC100040766
Upstream geneEfhd1, Tnrc15, LOC100040600, LOC100040591, 3110079O15Rik, Ngef, LOC620454, Neu2, Inpp5d, Atg16l1, Sag, Usp40, LOC545344, LOC677561, Ugt1a@, Ugt1a10, Ugt1a9, Ugt1a7c, Ugt1a6a, Ugt1a6b, Ugt1a5, Ugt1a2, Dnajb3, Ugt1a1
Downstream gene6430706D22Rik, LOC100038822, Trpm8, Spp2, Glrp1, Arl4c, LOC100040127, 2410088K16Rik, LOC208347, Sh3bp4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-484B19.T7 (MSMg01no484_b19.b1)MSMg01-484B19.TJ (MSMg01no484_b19.g1)
ACCAG563878AG563879
length759738
length of high quality
(start - end)		682 (74 - 755)664 (75 - 738)
definitionCHROMAT_FILE: MSMg01no484_b19.b1 PHD_FILE: MSMg01no484_b19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:05:33 2005CHROMAT_FILE: MSMg01no484_b19.g1 PHD_FILE: MSMg01no484_b19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:05:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAAGAGGCGC
GGAATTCTCCACTGTTGCANCCTGAGTGGCTGAGAAACACCTAAAGAAAT
GTTCAGCTTCCTTAGTCATAAGGAAAATGCAAATCAAAATGACCCTATGA
TTCCACCTTATACCAGTCAGAATTTCTAAGATCAAAAACTCAGGTGACAA
CAGATACTGGTGAAGATGTGGAGAAAGAGGAACACTCCTAAATTGCTAGT
GTGATTGCAAGCTAGTACAACCACTTTGGAAATCAATCTGGAGGTTCCTC
ATAAAATTGGCGCAAGCTCTACCTTTTTACCCAGGTATACCACTCCTGGA
CATAAAATACTCAAAAGATGCTCCAACACATAACAAAGACACATGCTTCA
CTGTGTTCAATGAAGCCTAATTTATAATAGCCAAAAGCTGGAAACAACCA
GAAAGTTTCTCAATGGAAGAATGGATACAGAAAATGTGATACATTTACAC
AATGGAATACTAATAGCTATTAAAAATGATGAGATCATGAACTTTGTAGG
CAAATGGATGGAACTAGAAAATATCATCTTGAGTGAGGTAACCCAAATCC
AAAAGGACATGCATGGTATGTACACACTTATAAGTGGATTTTAGCACAAA
AGCTCAGAATACCCATGATCCAAATCAAAAATCATATGAATTTTAATGAG
AAGTAAGTAAGGGAGAACAAAATAACCATGGCAGGCAGAGGAAGGGGGAT
CTGGCTGGG

CCATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAATATAGGAGCCTATAGAGGCCGATC
TTATTCAAACCACTACACTGGCATTAGTTTCTGAGCTGCTAGTGGCATAC
TGATAAATACAAGTACCCAGAACCATGAAATGGGCTTTGACCTTTAAAGA
AGTGGGACTTAAAGTCATTTCTGCCTAGGGGGCAGAGGTAGTCTTCCTGG
TGCCCATGGGAGTTTGTATAGCTGCAGGTTGAGGTCACAGAGTGTCTACA
AGACAGTGCTGTGAAGGGAATGTCTTGTATAAGATACAGGCAGAGTAAGG
GGCAGTGATAAGGAATGGGAGTGGCTCGGTACACAATGAAAACCTTGGGA
AAATGAGACACTTTTCCATTGTTTAGGGCACAGCCTAGGGAATGTTGCTG
CCCATGGTGGGCTGGGTCTTCCCTTCCTAGATTAACAACCTGACCTAGGT
AATTCCTTGTTAAAATTCTCTTTCCAAGTGGTTCTAAGTTGGAAACTTGG
GACAGAAGAGTGGAGAAAGCCTGGAATTCTGTCTTGCTCTGATCCTAGGC
GGTTTGCCCAGAGTTTAACTTCGACGAGGTTGTCTCTCTCATCCAGAAGC
TCTGTGAGAACATTGGGGCCATGGACCTGCAGCATGACAGGGCTGCTGTT
ACCTGGATAGGCATCTTCCTCCAGATGCGGGTCAAGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no484_b19.g1 MSMg01no484_b19.g1 CHROMAT_FILE:
MSMg01no484_b19.g1 PHD_FILE: MSMg01no484_b19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:33 2005
         (664 letters)



>mm_chr1_90147315_90148378
          Length = 1064

 Score =  393 bits (203), Expect = e-113
 Identities = 227/235 (96%)
 Strand = Plus / Plus

                                                                       
Query: 430 tccttgttaaaattctctttccaagtggttctaagttggaaacttgggacagaagagtgg 489
           |||||||||| |||||||||||| ||||||||||||| ||||||| ||||||||||||||
Sbjct: 411 tccttgttaagattctctttccaggtggttctaagttcgaaacttaggacagaagagtgg 470

                                                                       
Query: 490 agaaagcctggaattctgtcttgctctgatcctaggcggtttgcccagagtttaacttcg 549
           ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| ||
Sbjct: 471 agaaagcctggaattctgttttgctctgatcctaggtggtttgcccagagtttaactgcg 530

                                                                       
Query: 550 acgaggttgtctctctcatccagaagctctgtgagaacattggggccatggacctgcagc 609
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 acgaggttgtctctctcatccagaagctctgtgagaacattggggccatggacctgcagc 590

                                                                  
Query: 610 atgacagggctgctgttacctggataggcatcttcctccagatgcgggtcaagga 664
           |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 591 atgacagggctgctgtcacctggataggcatcttcctccagatgcgggtcaagga 645



 Score =  379 bits (196), Expect = e-109
 Identities = 208/212 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatataggagcctatagaggccgatcttattcaaaccactacactggcattagtttctga 60
           |||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 201 aatataggagcctataaaggccgatcttattcaaaccactacactggcattagctcctga 260

                                                                       
Query: 61  gctgctagtggcatactgataaatacaagtacccagaaccatgaaatgggctttgacctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctgctagtggcatactgataaatacaagtacccagaaccatgaaatgggctttgacctt 320

                                                                       
Query: 121 taaagaagtgggacttaaagtcatttctgcctagggggcagaggtagtcttcctggtgcc 180
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaagaagcgggacttaaagtcatttctgcctagggggcagaggtagtcttcctggtgcc 380

                                           
Query: 181 catgggagtttgtatagctgcaggttgaggtc 212
           ||||||||||||||||||||||||||||||||
Sbjct: 381 catgggagtttgtatagctgcaggttgaggtc 412


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 664
Length of database: 1064
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1054
Effective search space:   689316
Effective search space used:   689316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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