BAC Information

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BAC

Clone NameMSMg01-484E02
Chromosome1 (Build37)
Map Location 68,848,678 - 69,002,515
singlet/doubletdoublet
Overlap geneErbb4
Upstream genenone
Downstream geneLOC667842, EG241084, Ikzf2, Spag16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-484E02.T7 (MSMg01no484_e02.b1)MSMg01-484E02.TJ (MSMg01no484_e02.g1)
ACCAG563988AG563989
length738723
length of high quality
(start - end)		685 (54 - 738)605 (87 - 691)
definitionCHROMAT_FILE: MSMg01no484_e02.b1 PHD_FILE: MSMg01no484_e02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:05:45 2005CHROMAT_FILE: MSMg01no484_e02.g1 PHD_FILE: MSMg01no484_e02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:05:45 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,848,678 - 68,849,358)(69,001,911 - 69,002,515)
sequence
NNNNAAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCAAATGTTTCATTATGAGAAACACATTCCTTTTAATTG
TCATCCACCAAAACCCAAGAAATTCTGAAATAAAAGCAGTTTACATCTTT
TATGTAAACTTAAAAGTTAGAATTAGATAAATGAGAAACATTAAGCTGGA
ATGTGCCTCCAGAGGTCAGTTAGCCCATCCTTGCTTCCAGCAAGACTTGA
AGACTTCATCTAAAGCATATGTCTAACTACCTCTGTGTTATATTTGCTGA
GCCATCCTACTCTCTGACGTTCTGAATTAATGAAGTATTCTTGTACAAAC
TGGTTTAACTGTCCCAGCTAATTTAGCTAGTCAAGAGTGCCAGAAATCTG
GCTCAGTTAACAAGACATTTCACATTTAACTCATCCAAATGGAATATGTC
TTCAATGTAGTTAGCATATTTTGAATCTCTTTCACTGGTAAATACAATTA
ATGACTCAACAAAGTATCTGTATGAAGAGAGAACTAAAATATTAGACTTG
TACTAAATCTGACTAAATTGTTTCTTACTTGATCTTACTGAAAATTTACA
CAATATTCCCATCCTAGAGCAAGAGAATGTCTAGCATACTGTGTTCCTAA
ATTTACATATCTCTTACCCTTTGGTAATTCTTTATGAAAACTAAATTGGT
GGTCAAAAATTATAACAGGCACCATTTAGCAAATAAAA

TCCAAATAGTCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTCCACAGCAACA
TTTGGCCTCGAAAATGTCCTTTTGACAAATAGAGAAGCAATGAGTACACC
ATGTTCAAAAGTAATCTAATGGAGACTCTGGATGAGGCCGGTTGCCATCA
AATGAATCCATCACCATGAAATCCTTCATTGTTTGTCCATCATCTGAACT
CTCACAGCTCAGAAAGGATACTCTGTCCCCCACTGGCTTACCTCCTATAT
TCTTGCAGTGTAATGTAGTAACCAAGTGACCATGGGGCTGAGCAATTTTA
AGCCTCCCACACAGAGCTGGGCAGCACACTGTACCTTTGATAGAAAGAGA
CATTGCCACTCTGTTCAGTGGTCAGCTGCTGAGAGGAGGCAGGAAAAGTA
AAATGTCAAATCCGTATGAAAACCTTAGTCTGCTTCACTCTGGGCAACAG
ACATGTCTATTAGAGGAAGGTGAGACATACAGGATGAAACTTCTCAAAGA
CTGAGTTTATTGTAAATTTCTGAGGTTAATTTTGTGTATTTTCTTTGGCT
CCTCTATAATAACTCAATCTGTCCTAATGGCTTTGTATGGCTGCTTAGAG
TCTGTTATTAAACTTGCACTTTCACAAAGTTTCTGCTTTAGAAGAACAGG
GAGAAGACACAACATCCTCCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no484_e02.b1 MSMg01no484_e02.b1 CHROMAT_FILE:
MSMg01no484_e02.b1 PHD_FILE: MSMg01no484_e02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:45 2005
         (685 letters)



>mm_chr1_68848474_68849558
          Length = 1085

 Score = 1309 bits (677), Expect = 0.0
 Identities = 680/681 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaaatgtttcattatgagaaacacattccttttaattgtcatccaccaaaaccca 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaaatgtttgattatgagaaacacattccttttaattgtcatccaccaaaaccca 264

                                                                       
Query: 65  agaaattctgaaataaaagcagtttacatcttttatgtaaacttaaaagttagaattaga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agaaattctgaaataaaagcagtttacatcttttatgtaaacttaaaagttagaattaga 324

                                                                       
Query: 125 taaatgagaaacattaagctggaatgtgcctccagaggtcagttagcccatccttgcttc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 taaatgagaaacattaagctggaatgtgcctccagaggtcagttagcccatccttgcttc 384

                                                                       
Query: 185 cagcaagacttgaagacttcatctaaagcatatgtctaactacctctgtgttatatttgc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cagcaagacttgaagacttcatctaaagcatatgtctaactacctctgtgttatatttgc 444

                                                                       
Query: 245 tgagccatcctactctctgacgttctgaattaatgaagtattcttgtacaaactggttta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgagccatcctactctctgacgttctgaattaatgaagtattcttgtacaaactggttta 504

                                                                       
Query: 305 actgtcccagctaatttagctagtcaagagtgccagaaatctggctcagttaacaagaca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 actgtcccagctaatttagctagtcaagagtgccagaaatctggctcagttaacaagaca 564

                                                                       
Query: 365 tttcacatttaactcatccaaatggaatatgtcttcaatgtagttagcatattttgaatc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tttcacatttaactcatccaaatggaatatgtcttcaatgtagttagcatattttgaatc 624

                                                                       
Query: 425 tctttcactggtaaatacaattaatgactcaacaaagtatctgtatgaagagagaactaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tctttcactggtaaatacaattaatgactcaacaaagtatctgtatgaagagagaactaa 684

                                                                       
Query: 485 aatattagacttgtactaaatctgactaaattgtttcttacttgatcttactgaaaattt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aatattagacttgtactaaatctgactaaattgtttcttacttgatcttactgaaaattt 744

                                                                       
Query: 545 acacaatattcccatcctagagcaagagaatgtctagcatactgtgttcctaaatttaca 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 acacaatattcccatcctagagcaagagaatgtctagcatactgtgttcctaaatttaca 804

                                                                       
Query: 605 tatctcttaccctttggtaattctttatgaaaactaaattggtggtcaaaaattataaca 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tatctcttaccctttggtaattctttatgaaaactaaattggtggtcaaaaattataaca 864

                                
Query: 665 ggcaccatttagcaaataaaa 685
           |||||||||||||||||||||
Sbjct: 865 ggcaccatttagcaaataaaa 885


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1085
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1075
Effective search space:   725625
Effective search space used:   725625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no484_e02.g1 MSMg01no484_e02.g1 CHROMAT_FILE:
MSMg01no484_e02.g1 PHD_FILE: MSMg01no484_e02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:45 2005
         (605 letters)



>mm_chr1_69001711_69002715
          Length = 1005

 Score = 1170 bits (605), Expect = 0.0
 Identities = 605/605 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctccacagcaacatttggcctcgaaaatgtccttttgacaaatagagaagcaatgagta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tctccacagcaacatttggcctcgaaaatgtccttttgacaaatagagaagcaatgagta 746

                                                                       
Query: 61  caccatgttcaaaagtaatctaatggagactctggatgaggccggttgccatcaaatgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 caccatgttcaaaagtaatctaatggagactctggatgaggccggttgccatcaaatgaa 686

                                                                       
Query: 121 tccatcaccatgaaatccttcattgtttgtccatcatctgaactctcacagctcagaaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tccatcaccatgaaatccttcattgtttgtccatcatctgaactctcacagctcagaaag 626

                                                                       
Query: 181 gatactctgtcccccactggcttacctcctatattcttgcagtgtaatgtagtaaccaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gatactctgtcccccactggcttacctcctatattcttgcagtgtaatgtagtaaccaag 566

                                                                       
Query: 241 tgaccatggggctgagcaattttaagcctcccacacagagctgggcagcacactgtacct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgaccatggggctgagcaattttaagcctcccacacagagctgggcagcacactgtacct 506

                                                                       
Query: 301 ttgatagaaagagacattgccactctgttcagtggtcagctgctgagaggaggcaggaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttgatagaaagagacattgccactctgttcagtggtcagctgctgagaggaggcaggaaa 446

                                                                       
Query: 361 agtaaaatgtcaaatccgtatgaaaaccttagtctgcttcactctgggcaacagacatgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agtaaaatgtcaaatccgtatgaaaaccttagtctgcttcactctgggcaacagacatgt 386

                                                                       
Query: 421 ctattagaggaaggtgagacatacaggatgaaacttctcaaagactgagtttattgtaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctattagaggaaggtgagacatacaggatgaaacttctcaaagactgagtttattgtaaa 326

                                                                       
Query: 481 tttctgaggttaattttgtgtattttctttggctcctctataataactcaatctgtccta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tttctgaggttaattttgtgtattttctttggctcctctataataactcaatctgtccta 266

                                                                       
Query: 541 atggctttgtatggctgcttagagtctgttattaaacttgcactttcacaaagtttctgc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atggctttgtatggctgcttagagtctgttattaaacttgcactttcacaaagtttctgc 206

                
Query: 601 tttag 605
           |||||
Sbjct: 205 tttag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1005
Length adjustment: 10
Effective length of query: 595
Effective length of database: 995
Effective search space:   592025
Effective search space used:   592025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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