Query= MSMg01no484_f15.b1 MSMg01no484_f15.b1 CHROMAT_FILE:
MSMg01no484_f15.b1 PHD_FILE: MSMg01no484_f15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:53 2005
(580 letters)
>mm_chr1_71290224_71291203
Length = 980
Score = 1075 bits (556), Expect = 0.0
Identities = 574/580 (98%)
Strand = Plus / Plus
Query: 1 gtgtgctacaataaaatttgtgtagaaaactcccatcatgttgaatttgccaattttaca 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtgtgctaaaataaaatttgtgtagaaaactcccatcatgttgaatttgccaattttaca 260
Query: 61 tataaatgtgccaataaaatagtcaatgcagccctacttacatgattaaaatagttaaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tataaatgtgccaataaaatagtcaatgcagccctacttacatgattaaaatagttaaat 320
Query: 121 gtattagttctagatttatcccgatatcacctagagtttaattttccaatgcatgattct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtattagttctagatttatcccgatatcacctagagtttaattttccaatgcatgattct 380
Query: 181 caatgttggtcacataagtctaagactaacctgtcagtgttggcaaggccatacttgtct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caatgttggtcacataagtctaagactaacctgtcagtgttggcaaggccatacttgtct 440
Query: 241 taattttttataaaatattaatccataaagtatagtacaatccattgacttacttccaga 300
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taattccctataaaatattaatccataaagtatagtacaatccattgacttacttccaga 500
Query: 301 ctcacttcaaagttaagcatagcgcttatttttgtaggtcttgttggttgagctacataa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctcacttcaaagttaagcatagcgcttatttttgtaggtcttgttggttgagctacataa 560
Query: 361 aacttagtacaaagatgatggatgaccaaggaacaagctagcattcagtggagaaataat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aacttagtacaaagatgatggatgaccaaggaacaagctagcattcagtggagaaataat 620
Query: 421 taagagaaagggattcttcaattgctgtgttaagtgtgtgaatttaataaacctaaggtc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taagagaaagggattcttcaattgctgtgttaagtgtgtgaatttaataaacctaaggtc 680
Query: 481 tgttcattttctgtcactcacccatacaccctagtccaaaactgaccaatgaaaaccaag 540
||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct: 681 tgttcattttctgtcactcacccatacaccctagttcaaaactgatcaatgaaaaccaag 740
Query: 541 aagaaattagaggaggcattaatagctagttattttgtag 580
||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aagaaattagaggaggcattaatagctagttattttgtag 780
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 980
Length adjustment: 10
Effective length of query: 570
Effective length of database: 970
Effective search space: 552900
Effective search space used: 552900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no484_f15.g1 MSMg01no484_f15.g1 CHROMAT_FILE:
MSMg01no484_f15.g1 PHD_FILE: MSMg01no484_f15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:53 2005
(682 letters)
>mm_chr1_71363195_71364275
Length = 1081
Score = 1197 bits (619), Expect = 0.0
Identities = 667/683 (97%), Gaps = 3/683 (0%)
Strand = Plus / Minus
Query: 1 cttaaattgaacagaaggtactcaaatgattcacgactgaaatagttttcttcttcctat 60
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 719 cttaaattgaacagaaggtactcaaaagattcacgactgaaatagttttcttcttcctat 660
Query: 61 tcacagataatttctcgtgtattctggttgcactcatgtgatacgaacgtcaccaacccc 120
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 659 tcacagataatttctcgtgtattctggttgcactcatgtgataccaacgtcaccaacccc 600
Query: 121 aaactggaagatgccatgaaggagttctgcaagctgcctcttccagagagatcacatcag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 aaactggaagatgccatgaaggagttctgcaagctgcctcttccagagagatcacatcag 540
Query: 181 tcctacctcattggactcacccttctgcactacttagacatttacaatttcacatacaag 240
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 tcctacctcatcggactcacccttctgcactacttagacatttacaatttcacatacaag 480
Query: 241 gcaagttgccatgggtgaatatgtttccatgttagtttagtgtaaaaaaaattattgaca 300
||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct: 479 gcaagttgccacgggtgaatatgtttccatgctagtttagtgtaaaaaaa-ttattgaca 421
Query: 301 ggtgctgtctattttagagcaaaataagacttctaccaaaaatcatgtattgcaaatgtg 360
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 420 ggtgctgtctattttagagcaaaataagacttctaccaaagatcatgtattgcaaatgtg 361
Query: 361 aacatgggctcaagaatgaaactactgaccaagctttgtctatttttactttgtatatct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 aacatgggctcaagaatgaaactactgaccaagctttgtctatttttactttgtatatct 301
Query: 421 aaaaacaaggtaaaaataatatattagtac-ataacataaaatctattattatttcttat 479
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 300 aaaaacaaggtaaaa-taatatattagtaccataacataaaatctattattatttcttat 242
Query: 480 ttttcaataagcattatttagtacagtgaaaataaagattgggagctggaaagatagttg 539
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ttttcaatgagcattatttagtacagtgaaaataaagattgggagctggaaagatagttg 182
Query: 540 agtggttaagaaaaatggctgttctttcagaggacctgggttctaccacctacatggcac 599
||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct: 181 agtggttaagaaaaatgattgttctttcagaggacctgggttctaccacttacatggcac 122
Query: 600 atcatagtcatctataatcctagtgccagggggctgtgatagcatcttctggctactgca 659
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct: 121 atcatagtcatctataattctagtgccagggggctgtgatagcatcttctggcttctgca 62
Query: 660 ggcactgcctactgctgcacagt 682
|||||||||||||| ||||||||
Sbjct: 61 ggcactgcctactgttgcacagt 39
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 682
Length of database: 1081
Length adjustment: 10
Effective length of query: 672
Effective length of database: 1071
Effective search space: 719712
Effective search space used: 719712
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
