Query= MSMg01no484_h01.b1 MSMg01no484_h01.b1 CHROMAT_FILE:
MSMg01no484_h01.b1 PHD_FILE: MSMg01no484_h01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:06:00 2005
(664 letters)
>mm_chr1_134109302_134110365
Length = 1064
Score = 1224 bits (633), Expect = 0.0
Identities = 657/665 (98%), Gaps = 2/665 (0%)
Strand = Plus / Plus
Query: 1 gcactggggtgggcctagcccttgggtcagaaagcagcagaaaaaatgacttgctcccca 60
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcactggggtgggcctaacccttgggtcagaaagcagcagaaaaaatgacttgctcccca 260
Query: 61 atgtcaggcctgtagagaattcatttttctctggaaagagaggggcccgtggatttgaca 120
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 261 atgtcaggcctgtagagaattcatttttctctggaaagagaggggcccgtagatttgaca 320
Query: 121 ctctcaggatgcttctgtccctctcgctccctgctcaggggcaatgggatttgagacaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctctcaggatgcttctgtccctctcgctccctgctcaggggcaatgggatttgagacaga 380
Query: 181 cgctggctggccctgctgccatcaatatgtgtcccagccctgtccaatgtctgctctata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cgctggctggccctgctgccatcaatatgtgtcccagccctgtccaatgtctgctctata 440
Query: 241 atgagtattgtttcggaatgtcacctccattaatggggaagcgacacctgtgcacagcca 300
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgagtagtgtttcggaatgtcacctccattaatggggaagcgacacctgtgcacagcca 500
Query: 301 gaaccacctctctgtcttcattaggcagtccacagcctagctgcaggctgctctggctct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaaccacctctctgtcttcattaggcagtccacagcctagctgcaggctgctctggctct 560
Query: 361 gtgacagatgacaggcagaggagcgagagcagcaggctcctgctgtccaggattcattcg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtgacagatgacaggcagaggagcgagagcagcaggctcctgctgtccaggattcattcg 620
Query: 421 cagacaatgaccccgaatgccccctccccccaacaaacaccaaaatagacagctgagaaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cagacaatgaccccgaatgccccctccccccaacaaacaccaaaatagacagctgagaaa 680
Query: 481 aatgtccttctggagcaaggcgcagcaaggacagctaatagctagaaagcaggcttaagg 540
||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct: 681 aatgtccttctggagcaaggcacagcaaggacagttaatagctagaaagcaggcttaagg 740
Query: 541 aacagaggagcaagttcctgggacaagcaccttttcttgtctctgatcgcctatttaggg 600
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 741 aacagaggagcaagttcctgggacaagcgccttttcttgtctctgatcgcctatttaggg 800
Query: 601 tgggttatggggtctctgcctctttagcattccaactgtcttcacaggcc-cgatttttt 659
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 801 tgggttatggggtctctgcctctttagcattccaactgtcttcacaggccgcg-tttttt 859
Query: 660 gtttt 664
|||||
Sbjct: 860 gtttt 864
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1064
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1054
Effective search space: 689316
Effective search space used: 689316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no484_h01.g1 MSMg01no484_h01.g1 CHROMAT_FILE:
MSMg01no484_h01.g1 PHD_FILE: MSMg01no484_h01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:06:00 2005
(533 letters)
>mm_chr1_134284007_134284939
Length = 933
Score = 984 bits (509), Expect = 0.0
Identities = 527/533 (98%)
Strand = Plus / Minus
Query: 1 tctagtgaggagactggctgtagtgagaaggggtggggaggagcttaggggaactccgca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 tctagtgaggagactggctgtagtgagaaggggtggggaggagcttaggggaactccgca 674
Query: 61 cacagagatcctgttcagaatacagcctgtggctgaggcctgggagaatggctgagcgta 120
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 cacagagatcctgtttagaatacagcctgtggctgaggcctgggagaatggctgagcgta 614
Query: 121 gtgtgcagctcttcctgaaggcattgcccaccctccaccactccaatcccaccgctccgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 gtgtgcagctcttcctgaaggcattgcccaccctccaccactccaatcccaccgctccgt 554
Query: 181 gcaggaacagagccttttctgagaggaaaagccggaggatgctggccagggaaagttccc 240
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 553 gcaggaacagagccttttctgagaggaaaagccagaggatgctggccagggaaagttccc 494
Query: 241 agaggtgctctgtcctctgggatttctgaacagcatcatcatcactccttaaagaagata 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 agaggtgctctgtcctctgggatttctgaacagcatcatcatcactccttaaagaagata 434
Query: 301 ggagagttccaccttcatgttgttcctgtgttgttggaagcgctcttgactcaaggctca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 ggagagttccaccttcatgttgttcctgtgttgttggaagcgctcttgactcaaggctca 374
Query: 361 gatcctgttcctctgttcatagcttattctgttctctcttcctactgagtgaggatcagg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 gatcctgttcctctgttcatagcttattctgttctctcttcctactgagtgaggatcagg 314
Query: 421 gaagacaacagacaccaagggaaattagagctgaaccctagatggttttcctggtccggt 480
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 313 gaagacaacagacaccaagggaaattagagctgaaccctaggtggttttcctggtccggt 254
Query: 481 gtttgagggtgtttcagtgtcctgcgaatagctcctgttccttccccattcag 533
||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct: 253 gtttgagggtgtttcagcatcctgcgaatagctcctgttacttccccattcag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 933
Length adjustment: 10
Effective length of query: 523
Effective length of database: 923
Effective search space: 482729
Effective search space used: 482729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
