NNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTCACCTGTAGGAATACCGAATGGCTGAGAAGCACCTGAAA
AAATGTTCAGCATCCTTAATCATCAGGGAAATGCAAATAAAACAACCCTG
AGTTTCCACCTCACACCAGTTAGAATGGCTAAGATTAAAAATTCAGGTGA
CTGCAGATGCTGGCAAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTT
GATGGGATTACAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTC
CTCAGAAAATTGGACATAGTACTAATGGAGGATCCAGCAATACCTCTCCT
GGGCATATATCCAAAAGATGTTCCAACCAGTAAGAAGGACACATGCTCCA
CTATGTTCATAGCAGCCTTATTTATAATAGTCAGAAGCTGGAAAGAACCC
AGATGCCCCTCAACAGAGGAATGGATACAGAAATTGTGGTACATTTACAC
AATGGAGTACTACTCAGCTATTAAAAAATGAATTTATGAAATTCCTAGGC
AAATGGATGGACCTGAAGGGCATCATCCTGAGTGAGGTAACCCAATCACA
AAAGAACTCACATGATATGAACTCACTGATAAGTGGATAATAGCCCAGAA
ACTTAGAATCCCCAAGATATAAGATACATTTTGTAAAACATATGAAAGTC
AAGAAGAACGAAGACCAAAGTGTGGATACTTTGTTCCTTCTTAGAATG

AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCTTCCTGTATCCTTGTGGTTTCTGAG
GTGATAGCACACTACAGCTTAAATTCTTGTCAGCAAGAATCCCTCCATTA
TTACTTTTGCTTGACATGTAGTAGGTATATAGAGGAAATTAATTAAATAA
AGTGAGATATGTGTATGTGTGTTTTTATATATGCATATATATGTTCATGT
GTGTGAGTATGTGTGTATATATTCTGGTAACACACAAAATGGATAATTGT
CTTATCATGTAACTGTGATTGTTTTAAAATTTAACTATATAATTACAAAA
AATAAATTTGGCTAAAATCTTTTATACTAAGAAAATTGTGCCATTTGCCT
AATATGTGGAAGACATTCATCCTTTAGATCTCACTTTGATGAACTTTCAA
TTTTAATTAAATTCAAATAGAAATGTGGGTTGAGTTTTCTTTCCCAATTG
TGTTTTTCTGTAGCCTTGTGACTTTTCCTGCCAACTCTTGAACAACTTAT
TTTATTTCCTAACCTCTCTGATACTTAATTTGTTTTCTAATTAAGCTTCC
ACCAATAGTTGTATGATCATTCCCTTGACGTGGCATAGCTGTATATTTAC
TACGCCTGTCTTCTTTAAATATGTGAAGNAAACATTTCCCAGCTTAACAG
ACAGTTCACATGGAGCTATTGAAGTGAACTCTGGAAATGTAATATACTTG
AGTGTGTTTGCCTTT

Query= MSMg01no484_o20.g1 MSMg01no484_o20.g1 CHROMAT_FILE:
MSMg01no484_o20.g1 PHD_FILE: MSMg01no484_o20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:06:40 2005
         (681 letters)



>mm_chr1_96649757_96650836
          Length = 1080

 Score =  940 bits (486), Expect = 0.0
 Identities = 557/589 (94%), Gaps = 19/589 (3%)
 Strand = Plus / Minus

                                                                        
Query: 109  gaggaaattaattaaataa-agtgagatatgtgtatgtgtgtttttatatatgcatatat 167
            ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 1076 gaggaaattaattaaataaca-tgagatatgtgtatgtgtgtttttatatatgcatatat 1018

                                                                        
Query: 168  atgttc----------atgtgtgtgagtatgtgtgtatatattctggtaacacac----a 213
            ||||||          |||||||||||||| ||||||||||||||||||||||||    |
Sbjct: 1017 atgttcatgtgtgtgaatgtgtgtgagtatttgtgtatatattctggtaacacacaaaaa 958

                                                                        
Query: 214  aaatggataattgtcttatcatgtaactgtgattgttttaaaatttaactatataattac 273
            |||||||||||||| ||||||||||||  |||||||||||||||||||||||||||||||
Sbjct: 957  aaatggataattgtgttatcatgtaaccatgattgttttaaaatttaactatataattac 898

                                                                        
Query: 274  aaaaaataaatttggctaaaatcttttatactaagaaaattgtgccatttgcctaatatg 333
            || |||||||||| || |||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 897  aagaaataaatttagccaaaatcttttatactaagaaaattgtgccatttgcctagtatg 838

                                                                        
Query: 334  tggaagacattcatcctttagatctcactttgatgaactttcaattttaattaaattcaa 393
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 837  tggaagacattcatcctttagatctcactttgatgaactttcaattttaattaaattcaa 778

                                                                        
Query: 394  atagaaatgtgggttgagttttctttcccaattgtgtttttctgtagccttgtgactttt 453
            ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 777  atagaaacgtgggttgagttttctttcccaattgtg-ttttctgtagccttgtgactttt 719

                                                                        
Query: 454  cctgccaactcttgaacaacttattttatttcctaacctctctgatacttaatttgtttt 513
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718  cctgccaactcttgaacaacttattttatttcctaacctctctgatacttaatttgtttt 659

                                                                        
Query: 514  ctaattaagcttccaccaatagttgtatgatcattcccttgacgtggcatagctgtatat 573
            ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct: 658  ctaattaagcttccaccaatagttgtatgctcattcccttgacgtggcatagctatatat 599

                                                                        
Query: 574  ttactacgcctgtcttctttaaatatgtgaagnaaacatttcccagcttaacagacagtt 633
            |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 598  ttactaagcctgtcttctttaaatatgtgaagaaaacatttcccagcttaacagacagtt 539

                                                             
Query: 634  cacatggagctattgaagtgaactctggaaatg-taatatacttgagtg 681
            |||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct: 538  cacatggagctattgaagtgaactctgg-aatgttaatatacttgagtg 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 681
Length of database: 1080
Length adjustment: 10
Effective length of query: 671
Effective length of database: 1070
Effective search space:   717970
Effective search space used:   717970
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)