Query= MSMg01no484_p23.b1 MSMg01no484_p23.b1 CHROMAT_FILE:
MSMg01no484_p23.b1 PHD_FILE: MSMg01no484_p23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:06:46 2005
(598 letters)
>mm_chr1_181323933_181324931
Length = 999
Score = 1139 bits (589), Expect = 0.0
Identities = 595/597 (99%), Gaps = 1/597 (0%)
Strand = Plus / Minus
Query: 3 gaattctatatagtctggaagtacggtatgtatattaaaacatgaattatgcaagagtcc 62
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 gaattctatatagcctggaagtacggtatgtatattaaaacatgaattatgcaagagtcc 740
Query: 63 ccagcatgacactgtatcatttccaggacatcttttgggcatattttctctgtaattcta 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 ccagcatgacactgtatcatttccaggacatcttttgggcatattttctctgtaattcta 680
Query: 123 tagatagatgttttgtacattaaaacattttgtaattttatcaactatgtattcaataca 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 tagatagatgttttgtacattaaaacattttgtaattttatcaactatgtattcaataca 620
Query: 183 gaataaagtacttttggtagtaatac-ttttttttccttttatgagtatttatttgactt 241
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 619 gaataaagtacttttggtagtaatactttttttttccttttatgagtatttatttgactt 560
Query: 242 gagcatttatatttgttaatagcacaaaagaatcatcatatagtattgctttcaaacaca 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gagcatttatatttgttaatagcacaaaagaatcatcatatagtattgctttcaaacaca 500
Query: 302 tgctttccgagcaaaacgaaaaccggaattttactacagtaggtaagccttgacagtgat 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tgctttccgagcaaaacgaaaaccggaattttactacagtaggtaagccttgacagtgat 440
Query: 362 aggtgccatgaaaaacttaccaagttcttccctgtgctggccgctgtctccttaggctct 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 aggtgccatgaaaaacttaccaagttcttccctgtgctggccgctgtctccttaggctct 380
Query: 422 ctcgtgtccaggtgagagttcacagcacctgagtggaatttccactccctgtcttgtgtg 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ctcgtgtccaggtgagagttcacagcacctgagtggaatttccactccctgtcttgtgtg 320
Query: 482 gtgctagtgcccaggggcctggttcctaccacagtctttgagaagctctttgtctttctg 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 gtgctagtgcccaggggcctggttcctaccacagtctttgagaagctctttgtctttctg 260
Query: 542 gtgcagagggaaagttgttgagctatgttggtttagtacccttcagtctcctgtgtt 598
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 gtgcagagggaaagttgttgagctatgttggtttagtacccttcagtctcctgtgtt 203
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 999
Length adjustment: 10
Effective length of query: 588
Effective length of database: 989
Effective search space: 581532
Effective search space used: 581532
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no484_p23.g1 MSMg01no484_p23.g1 CHROMAT_FILE:
MSMg01no484_p23.g1 PHD_FILE: MSMg01no484_p23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:06:46 2005
(595 letters)
>mm_chr1_181263589_181264583
Length = 995
Score = 1081 bits (559), Expect = 0.0
Identities = 586/595 (98%)
Strand = Plus / Plus
Query: 1 caggacagccagggctatacagagaaaccctgtctcgaaacaaaacaaacaaaacaaaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggacagccagggctatacagagaaaccctgtctcgaaacaaaacaaacaaaacaaaac 260
Query: 61 aaaaacaaaaaagagaaatgcttaaaaaatgatttacaacgttcctctgagaattctata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaaacaaaaaagagaaatgcttaaaaaatgatttacaacgttcctctgagaattctata 320
Query: 121 aaatccacagaaagttctcaaaaaatattaatcaaatagtaggttcttcttggctatgag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaatccacagaaagttctcaaaaaatattaatcaaatagtaggttcttcttggctatgag 380
Query: 181 tttgcttaactagtcattacttccttcaagcatgactcagagggtcaagtttatagccca 240
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 381 tttgcttaactagtcattacttccttcaagcgtgactcagagggtcaagtttatagccca 440
Query: 241 aaggtgacaaaactacaggtgacaaaactctaagctgtgtacagccacacttaggcaaca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaggtgacaaaactacaggtgacaaaactctaagctgtgtacagccacacttaggcaaca 500
Query: 301 gggcgtcttgaaggaaggcaatgtaacgtgtgctgtgtggtctagataggaaggaacagt 360
|||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct: 501 gggcgtcttgaaggaaggcaatctaacgtgtgctgtgtgttctagataggaaggaacagt 560
Query: 361 tccctacagtgatggtcatagctgtgaaggggaaccatacatgcttaacatctaacccgc 420
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 561 tctctacagtgatgatcatagctgtgaaggggaaccatacatgcttaacatctaacctgc 620
Query: 421 atgtatttcttcactacacagctaaactgtatactgtcactggcagtcatttaaattccc 480
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atgcatttcttcactacacagctaaactgtatactgtcactggcagtcatttaaattccc 680
Query: 481 cctgccctttttcttttctcttattatcaatagtataatttaattatatcatttgtgtct 540
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 681 cctgccctttttcttttctcttattatcaatactataatttaattatatcatttgtgtct 740
Query: 541 tccccttcctccctacaaaccctcacatgcataccaccatgctctctgtcaagtt 595
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 741 tccccttcctccctacaaaccctcacatgcataccaccgtgctctctgtcaagtt 795
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 995
Length adjustment: 10
Effective length of query: 585
Effective length of database: 985
Effective search space: 576225
Effective search space used: 576225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
