BAC Information

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BAC

Clone NameMSMg01-485B02
Chromosome1 (Build37)
Map Location 90,147,508 - 90,285,646
singlet/doubletdoublet
Overlap geneLOC100040766, 6430706D22Rik, LOC100038822, Trpm8
Upstream geneEfhd1, Tnrc15, LOC100040600, LOC100040591, 3110079O15Rik, Ngef, LOC620454, Neu2, Inpp5d, Atg16l1, Sag, Usp40, LOC545344, LOC677561, Ugt1a@, Ugt1a10, Ugt1a9, Ugt1a7c, Ugt1a6a, Ugt1a6b, Ugt1a5, Ugt1a2, Dnajb3, Ugt1a1
Downstream geneSpp2, Glrp1, Arl4c, LOC100040127, 2410088K16Rik, LOC208347, Sh3bp4, LOC383542
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-485B02.T7 (MSMg01no485_b02.b1)MSMg01-485B02.TJ (MSMg01no485_b02.g1)
ACCAG564602AG564603
length739741
length of high quality
(start - end)		686 (51 - 736)657 (80 - 736)
definitionCHROMAT_FILE: MSMg01no485_b02.b1 PHD_FILE: MSMg01no485_b02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:06:52 2005CHROMAT_FILE: MSMg01no485_b02.g1 PHD_FILE: MSMg01no485_b02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:06:52 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,147,508 - 90,148,189)(90,284,990 - 90,285,646)
sequence
NNNNAACTCATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCAATATAGGAGCCTATAAAGGCCGATCTTATTCAAACCACT
ACACTGGCATTAGCTCCTGAGCTGCTAGTGGCATACTGATAAATACAAGT
ACCCAGAACCATGAAATGGGCTTTGACCTTTAAAGAAGGGGGACTTAAAG
TCATTTCTGCCTAGGGGGCAGAGGTAGTCTTCCTGGTGCCCATGGGAGTT
TGTATAGCTGCAGGTTGAGGTCCTTGTTAAGATTCTCTTTCCAGGTGGTT
CTAAGTTCGAAACTTAGGACAGAAGAGTGGAGAAAGCCTGGAATTCTGTT
TTGCTCTGATCCTAGGTGGTTTGCCCAGAGTTTAACTGCGACGAGGTTGT
CTCTCTCATCCAGAAGCTCTGTGAGAACATTGGGGCCATGGACCTGCAGC
ATGACAGGGCTGCTGTCACCTGGATAGGCATCTTCCTCCAGATGCGGGTC
AAGGAGCTGGAGGACAAGGTAACCAAGCTCAGCAGGGGATGCTTGGTACT
GGGACTGACCTGTGTAGCACACACGGAGACTGACCACTTCCACCCAAACC
AGGAGTGCTAAAGGGGATAAAACAGAGTTCTAGAATGAGAAAGCTGTTGA
GATGTAACTAGTCAGTGAGTAGATAAGGGACCATTGGTGCCAGGCTCTTT
TCAGTGAAGCACAGTGAAGACACACTGAACATGTANGAG

NAAAACGATGCTATGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTTGGGTGGTCCCTTCAGC
GGAAGTTCTGGTGAGCCCCAGAGAAAGAAGTCATTGCCTCAGTGTTCCCC
ACCCCACCCCTGTTTGACATGTGAGAAAGGAGAGGTTGCCCTTAGGTGTT
TTAGAATCTGGCCTTATTTTTCTTTGGGGTGGGGTAGGACTCTTTGACAG
TGTGTCGACGAATTCATCACACACTGCAGAAAAGGAAATAGACACAATAG
CAGTATAAGTATAAAATCAGGGCCAGAGTCACAGTCGTGGGAAAGGAGTG
TCAACACTTAATCCCTCAGCATCAGGACAAGGCTCTGAGATGCAGAAAAC
ACAGGCACCTTCACAGAGGAACATGGTCCTTTGCACCCCTCTTCAGGTGT
AAAGTCCTCTGTACACTTTGCTCCCTGACCTATGCCCTTGAGGGTGACTA
AGAGTCATCCACCCTGTGCTCAGGGACCTGAAAATGTCTCCTTTAGAAGT
CATTAGCAGTACTGTCCATCAGTGTCCCATGAGCCTCCACATCCAGGTGG
TTGCTGTGACCTGTGAAAATGAAGAAGATGCTGAATTATTAATACTAATT
CATAAATTAATAAATTAATTAACAAAAATTATTAATAAAATTTCCACCAA
AATGTTAGCCTGTGACGTTAGCTGTGCGTGTCTGGGAGTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no485_b02.b1 MSMg01no485_b02.b1 CHROMAT_FILE:
MSMg01no485_b02.b1 PHD_FILE: MSMg01no485_b02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:06:52 2005
         (686 letters)



>mm_chr1_90147305_90148390
          Length = 1086

 Score = 1280 bits (662), Expect = 0.0
 Identities = 677/682 (99%), Gaps = 1/682 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaa-tataggagcctataaaggccgatcttattcaaaccactacactggcattag 63
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattcaaatataggagcctataaaggccgatcttattcaaaccactacactggcattag 263

                                                                       
Query: 64  ctcctgagctgctagtggcatactgataaatacaagtacccagaaccatgaaatgggctt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctcctgagctgctagtggcatactgataaatacaagtacccagaaccatgaaatgggctt 323

                                                                       
Query: 124 tgacctttaaagaagggggacttaaagtcatttctgcctagggggcagaggtagtcttcc 183
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgacctttaaagaagcgggacttaaagtcatttctgcctagggggcagaggtagtcttcc 383

                                                                       
Query: 184 tggtgcccatgggagtttgtatagctgcaggttgaggtccttgttaagattctctttcca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tggtgcccatgggagtttgtatagctgcaggttgaggtccttgttaagattctctttcca 443

                                                                       
Query: 244 ggtggttctaagttcgaaacttaggacagaagagtggagaaagcctggaattctgttttg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ggtggttctaagttcgaaacttaggacagaagagtggagaaagcctggaattctgttttg 503

                                                                       
Query: 304 ctctgatcctaggtggtttgcccagagtttaactgcgacgaggttgtctctctcatccag 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ctctgatcctaggtggtttgcccagagtttaactgcgacgaggttgtctctctcatccag 563

                                                                       
Query: 364 aagctctgtgagaacattggggccatggacctgcagcatgacagggctgctgtcacctgg 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aagctctgtgagaacattggggccatggacctgcagcatgacagggctgctgtcacctgg 623

                                                                       
Query: 424 ataggcatcttcctccagatgcgggtcaaggagctggaggacaaggtaaccaagctcagc 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ataggcatcttcctccagatgcgggtcaaggagctggaggacaaggtaaccaagctcagc 683

                                                                       
Query: 484 aggggatgcttggtactgggactgacctgtgtagcacacacggagactgaccacttccac 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 684 aggggatgcttggtactgggactgacctgtgtagcacacacggagactgaccacttccat 743

                                                                       
Query: 544 ccaaaccaggagtgctaaaggggataaaacagagttctagaatgagaaagctgttgagat 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ccaaaccaggagtgctaaaggggataaaacagagttctagaatgagaaagctgttgagat 803

                                                                       
Query: 604 gtaactagtcagtgagtagataagggaccattggtgccaggctcttttcagtgaagcaca 663
           ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 804 gtaactagtcagtgagtagatgagggaccactggtgccaggctcttttcagtgaagcaca 863

                                 
Query: 664 gtgaagacacactgaacatgta 685
           ||||||||||||||||||||||
Sbjct: 864 gtgaagacacactgaacatgta 885


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 686
Length of database: 1086
Length adjustment: 10
Effective length of query: 676
Effective length of database: 1076
Effective search space:   727376
Effective search space used:   727376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no485_b02.g1 MSMg01no485_b02.g1 CHROMAT_FILE:
MSMg01no485_b02.g1 PHD_FILE: MSMg01no485_b02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:06:52 2005
         (657 letters)



>mm_chr1_90284893_90285949
          Length = 1057

 Score = 1255 bits (649), Expect = 0.0
 Identities = 655/657 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttttgggtggtcccttcagcggaagttctggtgagccccagagaaagaagtcattgcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 cttttgggtggtcccttcagcggaagttctggtgagccccagagaaagaagtcattgcct 695

                                                                       
Query: 61  cagtgttccccaccccacccctgtttgacatgtgagaaaggagaggttgcccttaggtgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 cagtgttccccaccccacccctgtttgacatgtgagaaaggagaggttgcccttaggtgt 635

                                                                       
Query: 121 tttagaatctggccttatttttctttggggtggggtaggactctttgacagtgtgtcgac 180
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 634 tttagaatctggccttatttttctttgggatggggtaggactctttgacagtgtgtcgac 575

                                                                       
Query: 181 gaattcatcacacactgcagaaaaggaaatagacacaatagcagtataagtataaaatca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 gaattcatcacacactgcagaaaaggaaatagacacaatagcagtataagtataaaatca 515

                                                                       
Query: 241 gggccagagtcacagtcgtgggaaaggagtgtcaacacttaatccctcagcatcaggaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 gggccagagtcacagtcgtgggaaaggagtgtcaacacttaatccctcagcatcaggaca 455

                                                                       
Query: 301 aggctctgagatgcagaaaacacaggcaccttcacagaggaacatggtcctttgcacccc 360
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 454 aggctctgagatgcagaaaacacaggcaccttcacagaagaacatggtcctttgcacccc 395

                                                                       
Query: 361 tcttcaggtgtaaagtcctctgtacactttgctccctgacctatgcccttgagggtgact 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tcttcaggtgtaaagtcctctgtacactttgctccctgacctatgcccttgagggtgact 335

                                                                       
Query: 421 aagagtcatccaccctgtgctcagggacctgaaaatgtctcctttagaagtcattagcag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 aagagtcatccaccctgtgctcagggacctgaaaatgtctcctttagaagtcattagcag 275

                                                                       
Query: 481 tactgtccatcagtgtcccatgagcctccacatccaggtggttgctgtgacctgtgaaaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 tactgtccatcagtgtcccatgagcctccacatccaggtggttgctgtgacctgtgaaaa 215

                                                                       
Query: 541 tgaagaagatgctgaattattaatactaattcataaattaataaattaattaacaaaaat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 tgaagaagatgctgaattattaatactaattcataaattaataaattaattaacaaaaat 155

                                                                    
Query: 601 tattaataaaatttccaccaaaatgttagcctgtgacgttagctgtgcgtgtctggg 657
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 tattaataaaatttccaccaaaatgttagcctgtgacgttagctgtgcgtgtctggg 98


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space:   677409
Effective search space used:   677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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