BAC Information

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BAC

Clone NameMSMg01-485B05
Chromosome1 (Build37)
Map Location 39,089,612 - 39,243,824
singlet/doubletdoublet
Overlap genenone
Upstream geneEif5b, Rev1, EG329123, Aff3, Lonrf2, Chst10, EG625775, Nms, Pdcl3
Downstream geneNpas2, LOC100041999, Rpl31, Tbc1d8, D1Bwg0212e, Rnf149, EG329126, Creg2, 4933400N17Rik, LOC100042065, Map4k4, Il1r2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-485B05.T7 (MSMg01no485_b05.b1)MSMg01-485B05.TJ (MSMg01no485_b05.g1)
ACCAG564608AG564609
length748748
length of high quality
(start - end)		422 (54 - 475)556 (79 - 634)
definitionCHROMAT_FILE: MSMg01no485_b05.b1 PHD_FILE: MSMg01no485_b05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:06:53 2005CHROMAT_FILE: MSMg01no485_b05.g1 PHD_FILE: MSMg01no485_b05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:06:53 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,089,612 - 39,090,031)(39,243,269 - 39,243,824)
sequence
TTTTTTTTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAA
TCCGCGGAATTCACTCTGTTTTCCAGGCTGGCCTTGAACTCAGAAATCCA
CTTGTCTCCTGAGTGCTGGGATCGAAGGCGTGAGCCACCACCGCCTGGCT
AGTGTTTTACCTTTGGCTGGAGTGTGGTGTTCCATGTAGGTTCCTCTTCC
ATTCTTGCCTCTAAATATCATTGTGTTGAGGTGTCAGATGGTGTTAGCTG
TTTCTGTAAGCAAACACTGCCTGTGGAGCTCCTGAACAAGGAGGTGCTCT
GGCGTTTGGTACAGATCTCCACACTTCCCACGGTTCTTTACCCCTTCCGC
ATCCTCTAACCTGCCCTCTCTCCTCCTTTGCTCTCTAAAGACCTCTGTGT
AGCCAGCCTTTCAGTTCCCAGTGACGTGGGTTGCTAGCAGAGATTAAATT
TCCATTTAAATGTTTTCTCTTCACTNCCTGATGGGTTTCCTCCCAATGGG
AATAATGGGGAAAAATTTCCCCGGGGGGGGGCGCCCCCCCCCCCCCTTTC
TTTTTGGTTTAGTTTCTTAAATGAACCCATAATTTTTCCCTCCCATCCCC
CCTATTTCAAGTTTACCTTCTTTATTATTCTTCCCGTTTATTCATTATTT
AATACTCCTAGTTACGTTCTCTCATCTCCATATACTTTTTTTTTTATCAT
TTTTATATTACACCACCTACTCTTATTTTCTATTATAAACTCTCTATT

GGTTTACGATGATGTGNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTAATCCCTCCCACCCACAGA
GTAAGCTAACAGCCTCCGCTGTAACCTGTGGAATGTGGGAGGGGCATGCG
GAATGTGGGAGGGGCATGTGGAATGTGGGCGGGGCATTCAGTCTGTGAGA
AGAAACAGAAGGGAGGGAAAGTGCTGAGGGGAGGGCTGGGGAAAGGCAGG
TGGTGAGAGCAGCAAAAGTGGGTGAACTGTGAAGGGGCCAGAAGGGCAGG
AGGTGGTGTTAGCTCCTGTAATTAGTGGAGAATTAGCAGAAGAATCAGGG
CTCAAACACAGCCAATGGAGGAAGGATCCTTTCTGCTCAGAGAGGCTTCT
GCTCTTGCTTGGTGTTGGTGAAGGCCCAGGCAAGCTGTTGAGACATGCAC
TTCTCTAATAAGCACCAGGAGCAGCCTTTAGGAACAGGCAGTGAAAGAGC
TGTGCTGACTCTCAAGTGGCCATTGTCTTAGCTGTTTCTATCCACTTTCC
ATTTACCTCAACATTAAAGAGGTGATTCTGATGTCTTTCCACACAGGTGC
TTGCATGCAGACACATGCACACATAAGGATACACACATGCACACACACAC
ATACAAACACACAAGGACACACACATTTATACACATGCACACTTACCAGT
ATGAACACACACACAAGGATACATACACATGTACACACACATGCTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no485_b05.b1 MSMg01no485_b05.b1 CHROMAT_FILE:
MSMg01no485_b05.b1 PHD_FILE: MSMg01no485_b05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:06:53 2005
         (422 letters)



>mm_chr1_39089410_39090231
          Length = 822

 Score =  789 bits (408), Expect = 0.0
 Identities = 417/420 (99%)
 Strand = Plus / Plus

                                                                       
Query: 3   ggaattcactctgttttccaggctggccttgaactcagaaatccacttgtctcctgagtg 62
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ggaattcactctgtagtccaggctggccttgaactcagaaatccacttgtctcctgagtg 262

                                                                       
Query: 63  ctgggatcgaaggcgtgagccaccaccgcctggctagtgttttacctttggctggagtgt 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ctgggatcgaaggcgtgagccaccaccgcctggctagtgttttacctttggctggagtgt 322

                                                                       
Query: 123 ggtgttccatgtaggttcctcttccattcttgcctctaaatatcattgtgttgaggtgtc 182
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ggtgttccgtgtaggttcctcttccattcttgcctctaaatatcattgtgttgaggtgtc 382

                                                                       
Query: 183 agatggtgttagctgtttctgtaagcaaacactgcctgtggagctcctgaacaaggaggt 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 agatggtgttagctgtttctgtaagcaaacactgcctgtggagctcctgaacaaggaggt 442

                                                                       
Query: 243 gctctggcgtttggtacagatctccacacttcccacggttctttaccccttccgcatcct 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gctctggcgtttggtacagatctccacacttcccacggttctttaccccttccgcatcct 502

                                                                       
Query: 303 ctaacctgccctctctcctcctttgctctctaaagacctctgtgtagccagcctttcagt 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ctaacctgccctctctcctcctttgctctctaaagacctctgtgtagccagcctttcagt 562

                                                                       
Query: 363 tcccagtgacgtgggttgctagcagagattaaatttccatttaaatgttttctcttcact 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tcccagtgacgtgggttgctagcagagattaaatttccatttaaatgttttctcttcact 622


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 822
Length adjustment: 9
Effective length of query: 413
Effective length of database: 813
Effective search space:   335769
Effective search space used:   335769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no485_b05.g1 MSMg01no485_b05.g1 CHROMAT_FILE:
MSMg01no485_b05.g1 PHD_FILE: MSMg01no485_b05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:06:53 2005
         (556 letters)



>mm_chr1_39243069_39244024
          Length = 956

 Score = 1067 bits (552), Expect = 0.0
 Identities = 555/556 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttaatccctcccacccacagagtaagctaacagcctccgctgtaacctgtggaatgtgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 tttaatccctcccacccacagagtaagctaacagcctccgctgtaacctgtggaatgtgg 697

                                                                       
Query: 61  gaggggcatgcggaatgtgggaggggcatgtggaatgtgggcggggcattcagtctgtga 120
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 696 gaggggcatgcggaatgtgggaggggcatgtggaatgtgggaggggcattcagtctgtga 637

                                                                       
Query: 121 gaagaaacagaagggagggaaagtgctgaggggagggctggggaaaggcaggtggtgaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 gaagaaacagaagggagggaaagtgctgaggggagggctggggaaaggcaggtggtgaga 577

                                                                       
Query: 181 gcagcaaaagtgggtgaactgtgaaggggccagaagggcaggaggtggtgttagctcctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 gcagcaaaagtgggtgaactgtgaaggggccagaagggcaggaggtggtgttagctcctg 517

                                                                       
Query: 241 taattagtggagaattagcagaagaatcagggctcaaacacagccaatggaggaaggatc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 taattagtggagaattagcagaagaatcagggctcaaacacagccaatggaggaaggatc 457

                                                                       
Query: 301 ctttctgctcagagaggcttctgctcttgcttggtgttggtgaaggcccaggcaagctgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 ctttctgctcagagaggcttctgctcttgcttggtgttggtgaaggcccaggcaagctgt 397

                                                                       
Query: 361 tgagacatgcacttctctaataagcaccaggagcagcctttaggaacaggcagtgaaaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tgagacatgcacttctctaataagcaccaggagcagcctttaggaacaggcagtgaaaga 337

                                                                       
Query: 421 gctgtgctgactctcaagtggccattgtcttagctgtttctatccactttccatttacct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 gctgtgctgactctcaagtggccattgtcttagctgtttctatccactttccatttacct 277

                                                                       
Query: 481 caacattaaagaggtgattctgatgtctttccacacaggtgcttgcatgcagacacatgc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 caacattaaagaggtgattctgatgtctttccacacaggtgcttgcatgcagacacatgc 217

                           
Query: 541 acacataaggatacac 556
           ||||||||||||||||
Sbjct: 216 acacataaggatacac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 956
Length adjustment: 10
Effective length of query: 546
Effective length of database: 946
Effective search space:   516516
Effective search space used:   516516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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