Query= MSMg01no485_e04.b1 MSMg01no485_e04.b1 CHROMAT_FILE:
MSMg01no485_e04.b1 PHD_FILE: MSMg01no485_e04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:08 2005
(412 letters)
>mm_chr1_163576745_163577556
Length = 812
Score = 679 bits (351), Expect = 0.0
Identities = 387/403 (96%), Gaps = 7/403 (1%)
Strand = Plus / Minus
Query: 4 gaattccatttaatttaactgcatgttcattatttttcagcaaatgctacctatgatcaa 63
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 gaattccatttaatttaaatgcatgttcattatttttcagcaaatgctacctatgatcaa 611
Query: 64 tgggtttttttttttttttggttatcctttaacatctttataaaagatataatttgcata 123
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 tggg-------tttttttgggttatcctttaacatctttataaaagatataatttgcata 558
Query: 124 ccaaaagacttacttatgaaagtgccactcagtagtgtttagtgtagtcacagaattgtg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ccaaaagacttacttatgaaagtgccactcagtagtgtttagtgtagtcacagaattgtg 498
Query: 184 tgacctgtacagtctggatttagcatcctttctctactccaagagcaaactttaagcctg 243
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 497 tgacctgtacagtctggatttagcatcctttctctactccaagagcaagctttaagcctg 438
Query: 244 ttagcacagtgacctcagccccgtctgatccagtcctgggaagcagtagttgataacgtg 303
|| |||| |||||||||||||| |||||||||||||||||||||||||| |||||| |||
Sbjct: 437 ttggcaccgtgacctcagccccttctgatccagtcctgggaagcagtagctgataatgtg 378
Query: 304 gtagatcttcaagtgtagttgcattggctggttgcattttattttgtatactgagccaac 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gtagatcttcaagtgtagttgcattggctggttgcattttattttgtatactgagccaac 318
Query: 364 tttcagttgctgggataatctgcacttggtatgtattattaaa 406
||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 317 tttcaattgctgggataatctgcacttggtatgtattattaaa 275
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 812
Length adjustment: 9
Effective length of query: 403
Effective length of database: 803
Effective search space: 323609
Effective search space used: 323609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no485_e04.g1 MSMg01no485_e04.g1 CHROMAT_FILE:
MSMg01no485_e04.g1 PHD_FILE: MSMg01no485_e04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:08 2005
(317 letters)
>mm_chr1_163414762_163415477
Length = 716
Score = 596 bits (308), Expect = e-175
Identities = 314/316 (99%), Gaps = 1/316 (0%)
Strand = Plus / Plus
Query: 1 attttgttttcctgaatggcttgtacctctttgagggtgtagcctaagagttataacatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attttgttttcctgaatggcttgtacctctttgagggtgtagcctaagagttataacatt 260
Query: 61 ttcaccataattttttggactatttagaataatatcttggtccttaaaaaaatctgagga 120
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 261 ttcaccataattttttggactatttagaataatatcttggtccttaaaaaa-tctgagga 319
Query: 121 aaatgaatgtttaaatatattgtcattaaacttaaatatattcatacttatcaattagta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 aaatgaatgtttaaatatattgtcattaaacttaaatatattcatacttatcaattagta 379
Query: 181 gagtgtgtgttattgcaatacttgcaaattaagtacttaattacttaacagagtagaagc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gagtgtgtgttattgcaatacttgcaaattaagtacttaattacttaacagagtagaagc 439
Query: 241 agaattttaggaatcctaaatagttacatctctgtacccataaatccatcattgggaaga 300
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 440 agaattttaggaatcctaaatagttacgtctctgtacccataaatccatcattgggaaga 499
Query: 301 tggagaagttaaatcc 316
||||||||||||||||
Sbjct: 500 tggagaagttaaatcc 515
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 716
Length adjustment: 9
Effective length of query: 308
Effective length of database: 707
Effective search space: 217756
Effective search space used: 217756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
