Query= MSMg01no485_e08.b1 MSMg01no485_e08.b1 CHROMAT_FILE:
MSMg01no485_e08.b1 PHD_FILE: MSMg01no485_e08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:09 2005
(239 letters)
>mm_chr1_194115542_194116180
Length = 639
Score = 455 bits (235), Expect = e-132
Identities = 238/239 (99%)
Strand = Plus / Minus
Query: 1 aacagctcaatggctagaagtgggacttccaccctatgaccacattgaaaagaagagcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 aacagctcaatggctagaagtgggacttccaccctatgaccacattgaaaagaagagcca 380
Query: 61 cagaaatcttagccagtgacagcagctactaagttgccattttgcactctaccaccaagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 cagaaatcttagccagtgacagcagctactaagttgccattttgcactctaccaccaagc 320
Query: 121 tccatatgcacaaaacacagccctcatctcccagccactgctgtttgtgttagtgttcat 180
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 319 tccatatgcacaaaacacagccctcatctcctagccactgctgtttgtgttagtgttcat 260
Query: 181 caaactaagtccattactgacaagccttgctctatctcctccttctctccctcttctaa 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 caaactaagtccattactgacaagccttgctctatctcctccttctctccctcttctaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space: 144900
Effective search space used: 144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no485_e08.g1 MSMg01no485_e08.g1 CHROMAT_FILE:
MSMg01no485_e08.g1 PHD_FILE: MSMg01no485_e08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:09 2005
(471 letters)
>mm_chr1_193959641_193960510
Length = 870
Score = 886 bits (458), Expect = 0.0
Identities = 467/470 (99%), Gaps = 1/470 (0%)
Strand = Plus / Plus
Query: 1 catgcaatggctttttacagctaggaaaattgaagctcagagaaggccagtgacttgctc 60
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catgcaatggttttttacagctaggaaaattgaagctcagagaaggccagtgacttgctc 260
Query: 61 agaagacaaaaacaagagagctgggaattaaatgcagcctatccttcagtgaacatgtct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaagacaaaaacaagagagctgggaattaaatgcagcctatccttcagtgaacatgtct 320
Query: 121 tctttccgatgtcaaactaagccctgaagcacagccataaagtgaaggaacccacctact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctttccgatgtcaaactaagccctgaagcacagccataaagtgaaggaacccacctact 380
Query: 181 agctagctatgccaacaagaaaaatacgactacaagaagcccaccacggcacacaccgat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agctagctatgccaacaagaaaaatacgactacaagaagcccaccacggcacacaccgat 440
Query: 241 agtcttctaataaaatatcccaacagctgtgtcgctttgaaggtaacccccaaatctgat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtcttctaataaaatatcccaacagctgtgtcgctttgaaggtaacccccaaatctgat 500
Query: 301 gagcactctggtatcatgtactgaaggaaactgtcctaattatgcttgtaactgttaccc 360
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 501 gagcactctggtatcatgtactgaaggaaactgtcctaattatgcttgtaacggttaccc 560
Query: 361 ttctcctttcagagaggggatactacctacttggtaagtcctaaatggggagaaggatgg 420
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 561 ttctcctttcagagaggggatactacctacttggtaagtcctaa-tggggagaaggatgg 619
Query: 421 aagccccctagcatacctaaactaaacggacatgactgctttccttgtga 470
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 aagccccctagcatacctaaactaaacggacatgactgctttccttgtga 669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 870
Length adjustment: 10
Effective length of query: 461
Effective length of database: 860
Effective search space: 396460
Effective search space used: 396460
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
