Query= MSMg01no485_e23.b1 MSMg01no485_e23.b1 CHROMAT_FILE:
MSMg01no485_e23.b1 PHD_FILE: MSMg01no485_e23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:13 2005
(633 letters)
>mm_chr1_186482797_186483829
Length = 1033
Score = 1104 bits (571), Expect = 0.0
Identities = 581/585 (99%), Gaps = 2/585 (0%)
Strand = Plus / Minus
Query: 22 cctaataacacccctttgtgataagattttgccaattatcccatcggaaggatttcttgt 81
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1033 cctaataacacccctttgtgataagattttgccaattatcccatcggaaggatttcttgt 974
Query: 82 ttctctagtccttgaatctgggtttggaaatggaaactgctttggtcaatgagtcattag 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 973 ttctctagtccttgaatctgggtttggaaatggaaactgctttggtcaatgagtcattag 914
Query: 142 taaatgagatgtgggcagaggattaacagtgcttgcacactggggttcatgacgcttgat 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 913 taaatgagatgtgggcagaggattaacagtgcttgcacactggggttcatgacgcttgat 854
Query: 202 gttagcactagcctgctgccctttgagcaagcctgggcttgcctgtttctggatgaggac 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 853 gttagcactagcctgctgccctttgagcaagcctgggcttgcctgtttctggatgaggac 794
Query: 262 tcagtagtacagaagtctgaagtgtcccagggaaatccatagatagataaataaagctag 321
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 793 tcagtagtacagaagtctgaagtgtcccagggaaatccatagatagatgaataaagctag 734
Query: 322 cttagtttttcaatacactgggagaataataggaatgacgtggcttgcagcctctgtttt 381
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 733 cttagtttttcaatacactgggagaataataggagtgacgtggcttgcagcctctgtttt 674
Query: 382 tgggagatgagttggacaacagaagttagttaatgcagagtgttgtctggagtcaactct 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 tgggagatgagttggacaacagaagttagttaatgcagagtgttgtctggagtcaactct 614
Query: 442 gtcccacagaaaatgaactgagagctccatacttctttatttatttcttcctctggtttt 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 gtcccacagaaaatgaactgagagctccatacttctttatttatttcttcctctggtttt 554
Query: 502 cagggactgtccaaatgacactatttttagtaaggcagaaaacaaaattgtaagtggtct 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 cagggactgtccaaatgacactatttttagtaaggcagaaaacaaaattgtaagtggtct 494
Query: 562 acttttttttttctttttctttttcttctccttcttcttcttctt 606
|||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 493 actttttttt--ctttttctttttcttctccttcttcttcttctt 451
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 73
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1033
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1023
Effective search space: 637329
Effective search space used: 637329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no485_e23.g1 MSMg01no485_e23.g1 CHROMAT_FILE:
MSMg01no485_e23.g1 PHD_FILE: MSMg01no485_e23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:13 2005
(474 letters)
>mm_chr1_186313153_186314026
Length = 874
Score = 878 bits (454), Expect = 0.0
Identities = 469/474 (98%)
Strand = Plus / Plus
Query: 1 ctaacagagggggctgggtgatttcatcaggcttctatggtgctaaaataacagatgagg 60
|||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct: 201 ctaacagagggggctgggtgatttcaacaggcttctatggtgttaaaataacagatgagg 260
Query: 61 aacgaggggtgcacctgaagatgtagtgggagccattgttcggaattctttcagtctccc 120
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacgaggggtgcacctgaagacgtagtgggagccattgttcggaattctttcagtctccc 320
Query: 121 caaagacatcctgtaaagatttagtatttagtgaaattggtttctgaagccagtcaccgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caaagacatcctgtaaagatttagtatttagtgaaattggtttctgaagccagtcaccgc 380
Query: 181 ctgcgagtaacccaagcatgcgaaagtcacctaggacagctaatatattgctggtgtgtt 240
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 381 ctgcgagtaacccaagcatgcgaaagtcaccgaggacagctaatatattgctggtgtgtt 440
Query: 241 tgttggtgcctttaaactcacgccttctgttcaaatgagcagagcccagtagtaattcac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgttggtgcctttaaactcacgccttctgttcaaatgagcagagcccagtagtaattcac 500
Query: 301 accgaaagactgtgtgagtgtgggaaggaaggaatataactttaaggggctccatttaca 360
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 accggaagactgtgtgagtgtgggaaggaaggaatataactttaaggggctccatttaca 560
Query: 361 atataagaagcccttatagcatgttgttaatttatgcacgcggtggactgctgaaaagca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atataagaagcccttatagcatgttgttaatttatgcacgcggtggactgctgaaaagca 620
Query: 421 ccgagcacttgtggggagccagaaaaggatctctggagatcactccacccggtg 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccgagcacttgtggggagccagaaaaggatctctggagatcactccacccggtg 674
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 874
Length adjustment: 10
Effective length of query: 464
Effective length of database: 864
Effective search space: 400896
Effective search space used: 400896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
