BAC Information

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BAC

Clone NameMSMg01-485H16
Chromosome1 (Build37)
Map Location 68,125,644 - 68,264,270
singlet/doubletdoublet
Overlap geneErbb4
Upstream geneCps1, Kif22-ps
Downstream geneLOC667842
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-485H16.T7 (MSMg01no485_h16.b1)MSMg01-485H16.TJ (MSMg01no485_h16.g1)
ACCAG564914AG564915
length736755
length of high quality
(start - end)		675 (53 - 727)525 (82 - 606)
definitionCHROMAT_FILE: MSMg01no485_h16.b1 PHD_FILE: MSMg01no485_h16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:07:26 2005CHROMAT_FILE: MSMg01no485_h16.g1 PHD_FILE: MSMg01no485_h16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:07:27 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,125,644 - 68,126,314)(68,263,746 - 68,264,270)
sequence
NNNNNAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCAAAGTTATCCTTGCTTTCTTCTTCGGTCACCAATGAT
CTCCCTTGCCTTGGTAGGGAAGAATTGAAAATATGTACCATTTTTGAAAT
AGGAGCTCTGAATATAAAGGAATGTGAGGGGATCAGCACAAATTCATCAT
CACTACAAGAAAAACAACTCAACCCACATCCCCTGTGGGTGATGGGTCAG
CAGAACGTATTTCAACTCAAAGGGCAGCTGTATGTAGCTGGGGATATAAT
TAGATCCTATGGAATAAAGATAAACATTTCTACTTTGCAGTTGAAAGCTT
AAAACTAAATAGGCATTTGAAATAATGAGGTTGGCTGCTCACCAAGGTGA
CACCAAGGTAACTCTATGACAGAATCATGGGATTCACTGAAAAGGAACCG
AAGACACAGTGAAAGTAATTTCCCTATGGGCAAGGAGTTGGCAGACTTTA
TGGAGTATGGACACCATGTTACAGAAGTACGTTTAAATCATAGGTGGCTT
GATAAAGACCTAATGGTGACCAGGATTTTAAAGCTGTAATGAATCTTGCT
TTAGACAAACTTTACAGGTGTATGTTCTTAAGATGGGTGAAGTCATATGA
TTTATAGACTGCTCTTTTTGAGGAATGTTGTTGAAAATTTCAAAGCTATG
ATTTTTTTCAACCACTGCTGCTTGTAGTAAACAGAA

NNTTTTTTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCATTTACTCTTGTGCTAT
CAGCTATGAATAAATTAATAGTGATTGGACTTGTTAATCAATTTTATTTA
ATTATAAAGGGTCAATGTATGTGGCCTTACATAGCATGTTTTCATAGAAT
TGATTGGCATTTTATCCTGGTGGAAAACGGTTTGGTTTTGGTCCAGGGTA
TTATGTAGAAAATTGCAGGCCTGTCTTACTATGAAATCATGATAATCATT
TAAAGACACATTATATTAATGAGGGCTATAGCAGTGGAAAAATGTACTCT
ACAGAGTAAAATTATGCCTTATGACAACGAATAAATAAGACACAGCTTTA
AAACCTTTAGAGATTAGGTGTGCATAGATCTGTGTATTATCTTGGAAGGA
AATATAGCTTTATCATATTATAATAAGAAGTTATCAGTATATATTATTCA
TACATAGATATATAAAATATTCATACATATACATCAATATATTAAAATAT
TTATGTACATACACAGATTTAAAGTCAGGATACAATTTCTACTTTTTATA
TATTAGGGCTGAGGCATGAAGTATGTTTTCATGTTTCTTATTCAGATTAA
TAATAAGTACTTTTAATCATTGTATGACTAAGTCCCAGATGAACATTAAG
AAATATAGAAAATTATCATATATTCNCAAATCTATTTTGATCTGTGCTAA
GTCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no485_h16.b1 MSMg01no485_h16.b1 CHROMAT_FILE:
MSMg01no485_h16.b1 PHD_FILE: MSMg01no485_h16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:26 2005
         (675 letters)



>mm_chr1_68125440_68126514
          Length = 1075

 Score = 1282 bits (663), Expect = 0.0
 Identities = 669/671 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaaagttatccttgctttcttcttcggtcaccaatgatctcccttgccttggta 64
           |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaaagttagctttgctttcttcttcggtcaccaatgatctcccttgccttggta 264

                                                                       
Query: 65  gggaagaattgaaaatatgtaccatttttgaaataggagctctgaatataaaggaatgtg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gggaagaattgaaaatatgtaccatttttgaaataggagctctgaatataaaggaatgtg 324

                                                                       
Query: 125 aggggatcagcacaaattcatcatcactacaagaaaaacaactcaacccacatcccctgt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aggggatcagcacaaattcatcatcactacaagaaaaacaactcaacccacatcccctgt 384

                                                                       
Query: 185 gggtgatgggtcagcagaacgtatttcaactcaaagggcagctgtatgtagctggggata 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gggtgatgggtcagcagaacgtatttcaactcaaagggcagctgtatgtagctggggata 444

                                                                       
Query: 245 taattagatcctatggaataaagataaacatttctactttgcagttgaaagcttaaaact 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 taattagatcctatggaataaagataaacatttctactttgcagttgaaagcttaaaact 504

                                                                       
Query: 305 aaataggcatttgaaataatgaggttggctgctcaccaaggtgacaccaaggtaactcta 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aaataggcatttgaaataatgaggttggctgctcaccaaggtgacaccaaggtaactcta 564

                                                                       
Query: 365 tgacagaatcatgggattcactgaaaaggaaccgaagacacagtgaaagtaatttcccta 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgacagaatcatgggattcactgaaaaggaaccgaagacacagtgaaagtaatttcccta 624

                                                                       
Query: 425 tgggcaaggagttggcagactttatggagtatggacaccatgttacagaagtacgtttaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tgggcaaggagttggcagactttatggagtatggacaccatgttacagaagtacgtttaa 684

                                                                       
Query: 485 atcataggtggcttgataaagacctaatggtgaccaggattttaaagctgtaatgaatct 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 atcataggtggcttgataaagacctaatggtgaccaggattttaaagctgtaatgaatct 744

                                                                       
Query: 545 tgctttagacaaactttacaggtgtatgttcttaagatgggtgaagtcatatgatttata 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tgctttagacaaactttacaggtgtatgttcttaagatgggtgaagtcatatgatttata 804

                                                                       
Query: 605 gactgctctttttgaggaatgttgttgaaaatttcaaagctatgatttttttcaaccact 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 gactgctctttttgaggaatgttgttgaaaatttcaaagctatgatttttttcaaccact 864

                      
Query: 665 gctgcttgtag 675
           |||||||||||
Sbjct: 865 gctgcttgtag 875


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1075
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1065
Effective search space:   708225
Effective search space used:   708225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no485_h16.g1 MSMg01no485_h16.g1 CHROMAT_FILE:
MSMg01no485_h16.g1 PHD_FILE: MSMg01no485_h16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:27 2005
         (525 letters)



>mm_chr1_68263665_68264589
          Length = 925

 Score = 1015 bits (525), Expect = 0.0
 Identities = 525/525 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcatttactcttgtgctatcagctatgaataaattaatagtgattggacttgttaatcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 tcatttactcttgtgctatcagctatgaataaattaatagtgattggacttgttaatcaa 547

                                                                       
Query: 61  ttttatttaattataaagggtcaatgtatgtggccttacatagcatgttttcatagaatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 ttttatttaattataaagggtcaatgtatgtggccttacatagcatgttttcatagaatt 487

                                                                       
Query: 121 gattggcattttatcctggtggaaaacggtttggttttggtccagggtattatgtagaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 gattggcattttatcctggtggaaaacggtttggttttggtccagggtattatgtagaaa 427

                                                                       
Query: 181 attgcaggcctgtcttactatgaaatcatgataatcatttaaagacacattatattaatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 attgcaggcctgtcttactatgaaatcatgataatcatttaaagacacattatattaatg 367

                                                                       
Query: 241 agggctatagcagtggaaaaatgtactctacagagtaaaattatgccttatgacaacgaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 agggctatagcagtggaaaaatgtactctacagagtaaaattatgccttatgacaacgaa 307

                                                                       
Query: 301 taaataagacacagctttaaaacctttagagattaggtgtgcatagatctgtgtattatc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 taaataagacacagctttaaaacctttagagattaggtgtgcatagatctgtgtattatc 247

                                                                       
Query: 361 ttggaaggaaatatagctttatcatattataataagaagttatcagtatatattattcat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 ttggaaggaaatatagctttatcatattataataagaagttatcagtatatattattcat 187

                                                                       
Query: 421 acatagatatataaaatattcatacatatacatcaatatattaaaatatttatgtacata 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 acatagatatataaaatattcatacatatacatcaatatattaaaatatttatgtacata 127

                                                        
Query: 481 cacagatttaaagtcaggatacaatttctactttttatatattag 525
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 cacagatttaaagtcaggatacaatttctactttttatatattag 82


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 925
Length adjustment: 10
Effective length of query: 515
Effective length of database: 915
Effective search space:   471225
Effective search space used:   471225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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