Query= MSMg01no485_h22.b1 MSMg01no485_h22.b1 CHROMAT_FILE:
MSMg01no485_h22.b1 PHD_FILE: MSMg01no485_h22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:28 2005
(554 letters)
>mm_chr1_32464065_32465017
Length = 953
Score = 1009 bits (522), Expect = 0.0
Identities = 543/550 (98%), Gaps = 1/550 (0%)
Strand = Plus / Plus
Query: 5 gaattcagcatactgttcatggtgccatctctaggctggtaggcttgggttctgtaagaa 64
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagcatactgtggatggtgccatctctaggctggtaggcttgggttctgtaagaa 264
Query: 65 ggcaggctgagcaaggcacgaggaacaagccattaagtgtcaccatcccctgcccctgat 124
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 265 ggcaggctgagcaaggcacgaggaacaagccagtaagtgtcaccatcccctgcccctgat 324
Query: 125 tcctgtcctatttgagttcctgtgaacagtgacatggacttgtaagtcaaataaaccctt 184
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 325 tcctgtcctatttgagttcctgtgaacagtgacatggacgtgtaagtcaaataaaccctt 384
Query: 185 tcctccccaacttgttttttggtcatggtgtttctttgtacaagtagaaaccctaaggca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcctccccaacttgttttttggtcatggtgtttctttgtacaagtagaaaccctaaggca 444
Query: 245 atcaggtagctgggtctccctccaacatcttcccaaactgtgctaagccctattgaatgc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atcaggtagctgggtctccctccaacatcttcccaaactgtgctaagccctattgaatgc 504
Query: 305 aaagtgtgtaaccatgaaaagattaccttcatagagctgactgccaagactacgaaaggc 364
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gaagtgtgtaaccatgaaaagattaccttcatagagctgactgccaagactacgaaaggc 564
Query: 365 ctcagcctaggagaacattttctgcaaacagtgcagacaagcaggggtgagctcttgctc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctcagcctaggagaacattttctgcaaacagtgcagacaagcaggggtgagctcttgctc 624
Query: 425 agcatctggccattgcttctgtactgtgtacttatgtgtgtctgcttttctctgtatata 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 agcatctggccattgcttctgtactgtgtacttatgtgtgtctgcttttctctgtatata 684
Query: 485 attcatactacttatttatactcactcaaaatttttcaacaagtgccattttgaaaatgc 544
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 685 attcatactatttatttatactcactcaaaatttttcaacaagtgccattttgaaa-tgc 743
Query: 545 ttttaaactg 554
||||||||||
Sbjct: 744 ttttaaactg 753
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 953
Length adjustment: 10
Effective length of query: 544
Effective length of database: 943
Effective search space: 512992
Effective search space used: 512992
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no485_h22.g1 MSMg01no485_h22.g1 CHROMAT_FILE:
MSMg01no485_h22.g1 PHD_FILE: MSMg01no485_h22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:28 2005
(470 letters)
>mm_chr1_32617523_32618392
Length = 870
Score = 789 bits (408), Expect = 0.0
Identities = 456/472 (96%), Gaps = 4/472 (0%)
Strand = Plus / Minus
Query: 1 tttcaagcacataagctcttgaaaaaacagtgagattttgaatctgaaaggttagagatt 60
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 670 tttcaagcacataacctcttgaaaaaaca-tgagattttgaatctgaaaggttagagatt 612
Query: 61 gtgcctgaccgaaatgacacatacattttc-agaggctacttttcaaaagatgtctttat 119
|| |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 611 gtccctgaccgaaatgacacacacattttctagaggctacttttcaaaagatgtctttat 552
Query: 120 gagcaatgaaataaatctctttaaacttaaaatgtaggtaagcgttcctcattggctgct 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 gagcaatgaaataaatctctttaaacttaaaatgtaggtaagcgttcctcattggctgct 492
Query: 180 tttgttttaccatttacttacttgggagtatttgccctttagtttcatcaagttttctaa 239
|||| |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 491 tttgctttaccgtttacttacttgggagtatttgccctttagtttgatcaagttttctaa 432
Query: 240 tccattaggtttgagaggtgtttaagtgtgtgcattttaagccgcagttgctggggaatt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 tccattaggtttgagaggtgtttaagtgtgtgcattttaagccgcagttgctggggaatt 372
Query: 300 aatcactgctctcg-caatatgccttacttaggactttctgagaacaacagcacaggaag 358
|||||||||||| | |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 371 aatcactgctct-gacaatatgccttactgaggactttctgagaacaacagcacaggaag 313
Query: 359 acaacggaagactgaaccagcagaatgattcttcaaccgcctttcacctgacaaagctcc 418
|||||||||||||||||| |||||||||||||||||| || ||||||||||||||||||
Sbjct: 312 acaacggaagactgaaccggcagaatgattcttcaactgcagttcacctgacaaagctcc 253
Query: 419 tcgcctgcgttttccacctggtcttcaaaataactctgagttaagaaaagat 470
||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 252 tcgcctgcgttttccacctggtcttcaaaataactctgacttaagaaaagat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 870
Length adjustment: 10
Effective length of query: 460
Effective length of database: 860
Effective search space: 395600
Effective search space used: 395600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
