BAC Information

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BAC

Clone NameMSMg01-485J22
Chromosome1 (Build37)
Map Location 179,945,739 - 179,946,076
singlet/doubletsinglet
Overlap geneEG545391
Upstream geneSdccag8, Akt3, Zfp238, EG631449, LOC100040770, 1700016C15Rik, Adss, EG631584
Downstream geneLOC666262, 5830417C01Rik, LOC666284, 4930527J03Rik, LOC666295, B230369F24Rik, LOC669454, 2310005N03Rik, Hnrpu, Efcab2, D230039L06Rik, Kif26b, Smyd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-485J22.T7 (MSMg01no485_j22.b1)MSMg01-485J22.TJ (MSMg01no485_j22.g1)
ACCAG565021AG565022
length739758
length of high quality
(start - end)		656 (81 - 736)584 (85 - 668)
definitionCHROMAT_FILE: MSMg01no485_j22.b1 PHD_FILE: MSMg01no485_j22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:07:38 2005CHROMAT_FILE: MSMg01no485_j22.g1 PHD_FILE: MSMg01no485_j22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:07:38 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NNNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAAATA
CGCGGAATTCTTTGTTCAGTTTCGAGCCCCATTTTTTAATGGGTTTATTT
GATTTTCTGGAGTCCAACTTCTTGAGTTCGTCATATATACTTGATATTAG
TCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCATCTGTTGCTGG
CCTTTTTGTCTTATCGACAGTGTCTTTTGCCTATAAGAAGCTTTGCAGTT
TCATGAGGTCCCATTTGTCAATTCTCGAACTTACAGCACAAGCCATTGCT
GTTCTATTCAGGAATTTTTCCCCTGTGTTTTTATCTTCGAGGATTTTGCC
CACTTTCTCCTCTATGAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTCCT
TGATCCACTTAGATTTGACCTTAGTACAAGGAGATAGGAATGGATCAATT
CGCATTCTTCTACATGATAACCACCAGTTGTGCCAGCAACATTTGTTGAA
AATGCTGTCTTTTTTCCACTGGATGATTTTAGCGCCCTTGTCAAAGATCA
AGTGACCATAGGTGTGTGGATTCATTTTTGGGTCTTCAATTCTATTCCAT
TGGTCTATTTGTCTGTCAGTATACCAGTACCATGCAGTTTTTACCACAAT
TGCTCTGTAGTACAGCTTTAGGTCAGGCATGGTGATTCTACCAGAGGTTC
TTTTATCCTTGAGAAGAGTTTTTGCTATCCTAGGTTTTN

NNNNAACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTTTTGCAGTGTAGT
GTTGTCTTGGGTGATCTAGTGTTCAGAAACCACGAAGAAGAGGAAGTAGT
TACAAATGTATATGAGGGTGAATAAAAATCCACCCACAACTTTTAAGCTT
AAGCAATTCAACTGGGTGCTAGGAAGAGAAAACAAGAAAAAAAAAAAGAA
AGAAAAAAAACCCCTCTAATATAGCAACTGTCTAAGATGCTGTTCCATTG
ATGTGAAGAGTCGCCAGGACCAAGACAACTCTTTATTAAAGAAAGCATTT
AGTTGGGGTATGCTCATAGTTTCAAAGGCTTAGTCTACTATCACGGTGAG
CAACAGACAGGCACTGGATCAGTAGCTGAGAGCTGTGTACTCTAATCCAT
GAACAGCAGGCCAGGAGAGACACTTCTGTCAGGCATGAGCTTTTGAAACT
TGAAGGCCCACCCCAAGTGACACACCTCCTTCAGTAAGGACACACCTATT
CCAACAAAGAATATCTTGAATACCTCCTAATCCTTCCAACCAGTCAGCTG
GGGACTCAACAGGCAAATGTAGAGCCTATTGGAGAGCAGGGTGGGGGTGG
GAACTATTTTTATTCAAACCTCCATGGGGCTTTTTCCTTCTGCTTTCCTT
GAGCTAGCCTTTCTTTGCACATAAGTTTAGTGGAAGGAAATTTNACTGAG
TCAGAAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no485_j22.g1 MSMg01no485_j22.g1 CHROMAT_FILE:
MSMg01no485_j22.g1 PHD_FILE: MSMg01no485_j22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:38 2005
         (584 letters)



>mm_chr1_179945739_179946722
          Length = 984

 Score =  482 bits (249), Expect = e-140
 Identities = 321/355 (90%), Gaps = 21/355 (5%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccttttgcagtgtagtgttgtcttgggtgatctagtgttcagaaa--ccacgaagaagag 58
           |||||||||||||||||||||||||||||||||||||||||||||   ||  ||||||||
Sbjct: 338 ccttttgcagtgtagtgttgtcttgggtgatctagtgttcagaaatggca--aagaagag 281

                                                                       
Query: 59  gaagtagttacaaatgtatatgagggtgaataaaaatccacccacaacttttaagcttaa 118
           |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| 
Sbjct: 280 gaagaagttacaaatgtatatgagggtgattaaaaatccacccacaacttttaagcttag 221

                                                                       
Query: 119 gcaattcaactgggtgctaggaagagaaaacaagaaaaaaaaaaagaaagaaaaaaaacc 178
           |||||||||||| ||||||| ||||||||||||||||||||||||              |
Sbjct: 220 gcaattcaactgagtgctagaaagagaaaacaagaaaaaaaaaaa--------------c 175

                                                                       
Query: 179 cctctaatatagcaactgtctaagatgctgttccattgatgtgaagag-tcgccaggacc 237
           |||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||
Sbjct: 174 cctctaatatagcaactgtctaagatgctgttccattgatgtgaagagat-gcccggacc 116

                                                                       
Query: 238 aa-gacaactctttattaaagaaagcatttagttggggtatgctcatagtttcaaaggct 296
           || ||||| ||  ||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 115 aaagacaattcagtataaaagaaagcttttagttggggtatgctcatagtttcaaaggct 56

                                                                  
Query: 297 tagtctactatcacggtgagcaacagacaggcactggatcagtagctgagagctg 351
           |||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 55  tagtctactatcacggtgagcaacagacaggcactgaatcagtagctgagagctg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 984
Length adjustment: 10
Effective length of query: 574
Effective length of database: 974
Effective search space:   559076
Effective search space used:   559076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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