BAC Information

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BAC

Clone NameMSMg01-486B10
Chromosome1 (Build37)
Map Location 70,837,948 - 70,838,324
singlet/doubletsinglet
Overlap geneA830006F12Rik, LOC100043210
Upstream geneSpag16
Downstream geneEG667884, EG666083, LOC100042804, LOC100042809, Bard1, LOC667900, Abca12, LOC629101, Atic, Fn1, LOC100042814, Gabarapl2-ps1_652.1, LOC383528
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-486B10.T7 (MSMg01no486_b10.b1)MSMg01-486B10.TJ (MSMg01no486_b10.g1)
ACCAG565375AG565376
length1,371735
length of high quality
(start - end)
---377 (81 - 457)
definitionCHROMAT_FILE: MSMg01no486_b10.b1 PHD_FILE: MSMg01no486_b10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:08:17 2005CHROMAT_FILE: MSMg01no486_b10.g1 PHD_FILE: MSMg01no486_b10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:08:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGGCTTACACCAATCTTTATGCGTCTTGCGTGTGCCGCTTGTCACAGACG
TGTAGTCTTGTTCTTCTCCCGGGCCGCGGGGANTGCAGCCTGGCGTTTAT
TTCCTCCCTTCGTATGCGCGGCGGCGCGGCGAAGAATTAGATGTGAATTC
TAAGTCATTTGATTTGTGGTGAGCTAACTCCCAGGATTGACGTGGAGAGT
ACACACCTATACACACTGTCTCTCTCGTCTACGCCTGCTCTCGCAGCGGC
GCCGCCTTTGGTGGCTTGTGGTCCTCCAGCCGCGCCCGTCCACGATATGT
GCGATTGTTCCCGCACTGATTTATGTAATGTAATATCGGCGCGATTTAGA
CCTTAGTTGAATGCGAGCGCGTATTACCAGGCCTATTTTATACGCGCGCG
CACCCGCAGCGTGATTATTTTGTGCGCCGGGCGTTTACCCCAGTATCGAC
CCGCATCCAATTAAAGAAAGATGTCACGTTTATAACCGCCATAAATCATC
ATCTACAATGATCAACAGTGATTGAGAGTATGACCAGATACCGTGAGATT
TCAGTCCGTAACTATTATTGTTTACCCACGCGGCCCATGTGCTATATATA
ATAGATTCAGGTGGTCGCGCTCGCCAATTAGTTAGTTAATTCTATTCGCA
GGAAACAATCACAGCCAGACTGCGTCCCCTCTCCCTTCTTAATAACTACA
CTTATTATTTTATATTGCGATGAGGTATATATAGAGATATAGAATGATTA
GAGNTATCTCTAGTCGCTAGTTCTGTCCATCGGTTATGTAAGCTTTGAGA
ACAGCTGNCACGACGGACCCTCGCTTGGATGCGNAGTCAGGACCAGTCTA
TGCAGACACTGGACACNACAGACGATATATGGATAGTATCTGATACAGCG
ATAGTCTATATTAAGCGAGATACGATATGATAATAGATATCGCGCGAGTA
CGATTGACGATAGCGCAGATGTTATGTCTACATCTCCATCTGATATCTCA
TACACCGATATGATTATATTCAATGATATTGTTGAGTATGTGGCTAGACA
NCGATCGCACGAACGAATCGTGATATCGTNGAGTCGGTGAATGAGACACC
CGGCAGACGAGTGCGTAGGATTATGAGTAGGCACACCGGATCTGCGGTGA
GAGTAACGAGTATGTGCGGTTCTATGATGAGTCATGTAGAGATATCGAGG
NAGGANGTGTATGTGTGCGCGTAAGTGTCAGCGAGAGAAGGTATGGACAG
TACTGATCAACGACGAGATATAGAGTTATAAGTATACGTAATAGCATGGC
ATGTGATCATTGATGTATATTATTCGAATGCAGGAGAGCGATCACTGAAT
AGTGACGTTCTAGTGCTGTGG
NGGCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTTCGCTAGCACCCACTTG
GCAGATTACAACTGTCTGTAAGTCCATTTTCAGGGTGCCTAATGCCCACT
TCTTGCCTGCACAGGCACTAAGCACGCATATGGTCAACACTCATACACAT
AAAAATATGTCTTTTAAAAATAAAAAATGTCTTAAAAAATTGAACAAGCA
AACATGGCTACCATAGTCAAGGACCTCCCAGGATGGAGAAATGCATGGGG
ACAGTTATAATTTCAAATTCGGAGTATAGTCACAGGTGGCCCTACATTGC
CCCGCACACCACCCCCCTGCACGCCCCTGTGCCCCTGTGCACGCACACAT
GTATGTATGTGTGTGTGTGTATGTATATATGTGTATGTATGTGTATGTAT
ATATGTGNANANNNNNNNNNNNNNNNNNNNNNTTTNNNNNNNNTNTNNNT
TNTNNTTNNNTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTNTTTTT
TTTTTTTTNTTTTTTTTNTTTNTTTNTTTTTNTTNTTNNTTTTTNTTTTT
TNNTTTTTTTNTTTTTTTNTTTTTTTTTTTTTTTTTTTNNTTTTTTTTTT
TTTTTTTTTTTTTTNTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTNNNTT
TTNNTTTTNNTTTTTTTTTTTTTTTTTTTTTTNTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no486_b10.g1 MSMg01no486_b10.g1 CHROMAT_FILE:
MSMg01no486_b10.g1 PHD_FILE: MSMg01no486_b10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:17 2005
         (377 letters)



>mm_chr1_70837820_70838596
          Length = 777

 Score =  661 bits (342), Expect = 0.0
 Identities = 369/378 (97%), Gaps = 2/378 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atttcgctagcacccacttggcagattacaactgtctgtaagtccattttcagggtgcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atttcgctagcacccacttggcagattacaactgtctgtaagtccattttcagggtgcct 446

                                                                       
Query: 61  aatgcccacttcttgcctgcacaggcactaagcacgcatatggtcaacactcatacacat 120
           |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 445 aatgcccatttcttgcctgcacaggcactaagcacacatatggtcaacactcatacacat 386

                                                                       
Query: 121 aaaaatatgtcttttaaaaataaaaaatgtcttaaaaaattgaacaagcaaacatggcta 180
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 385 aaaaatatgtcttttaaaaataaaaattgtcttaaaaaattgaacaagcaaacatggcta 326

                                                                       
Query: 181 ccatagtcaaggacctcccaggatggagaaatgcatggggacagttataatttcaaa-tt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 325 ccatagtcaaggacctcccaggatggagaaatgcatggggacagttataatttcaaactt 266

                                                                       
Query: 240 cggagtatagtcacaggtggccctacattgccccgcacaccacccccctgcacgcccctg 299
            |||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct: 265 -ggagtacagtcacaggtggccctacattgccccgcgcaccacccccctgcatgcccctg 207

                                                                       
Query: 300 tgcccctgtgcacgcacacatgtatgtatgtgtgtgtgtgtatgtatatatgtgtatgta 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 206 tgcccctgtgcacgcacacatgtatgtatgtgtgtgtgtgtatgtatatatgtatatgta 147

                             
Query: 360 tgtgtatgtatatatgtg 377
           ||||||||||||||||||
Sbjct: 146 tgtgtatgtatatatgtg 129


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 377
Length of database: 777
Length adjustment: 9
Effective length of query: 368
Effective length of database: 768
Effective search space:   282624
Effective search space used:   282624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)