Query= MSMg01no486_c20.b1 MSMg01no486_c20.b1 CHROMAT_FILE:
MSMg01no486_c20.b1 PHD_FILE: MSMg01no486_c20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:24 2005
(247 letters)
>mm_chr1_134966283_134966929
Length = 647
Score = 443 bits (229), Expect = e-129
Identities = 246/259 (94%), Gaps = 12/259 (4%)
Strand = Plus / Minus
Query: 1 aagatgtgaaaccacagcctgttgtgtaagggctttcaatgtaacattaaaatga----- 55
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 aagatgtgaaaccacagcctgttgtgtaagggctttcaatgtaacattaaaatgaacaca 486
Query: 56 -------acacacacacacacacacacacacacacacatgaaatccagaaatacattacc 108
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 cacacacacacacacacacacacacacacacacacacatgaaatccagaaatacattacc 426
Query: 109 tgccaacctaggacaccaaagaacaaactaaaaaaggatttgaagcctgggctaagaaca 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgccaacctaggacaccaaagaacaaactaaaaaaggatttgaagcctgggctaagaaca 366
Query: 169 gaagctgtggcagtggacaagagtggccaaacctgctctgtgagggggacatgtctgacc 228
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 365 gaagctgtggcagtggacaagagtggccaaacctgctctgtgaggaggacatgtctgacc 306
Query: 229 agcccagtgtggccataat 247
|||||||||||||||||||
Sbjct: 305 agcccagtgtggccataat 287
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space: 151844
Effective search space used: 151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no486_c20.g1 MSMg01no486_c20.g1 CHROMAT_FILE:
MSMg01no486_c20.g1 PHD_FILE: MSMg01no486_c20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:24 2005
(415 letters)
>mm_chr1_134817465_134818282
Length = 818
Score = 777 bits (402), Expect = 0.0
Identities = 413/418 (98%), Gaps = 3/418 (0%)
Strand = Plus / Plus
Query: 1 tgccggcttctcccagttccacagcccctgcggggaccaagctgcacaatacaatgggat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgccggcttctcccagttccacagcccctgcggggaccaagctgcacaatacaatgggat 260
Query: 61 ttaataaaatgcctttaactcacaaagtctgtctgctgccagctccttaattaaattgcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttaataaaatgcctttaactcacaaagtctgtctgctgccagctccttaattaaattgcc 320
Query: 121 caactctctctgcaatggcagcacgaactcccgcgtctaaagagcacggtgttgctatgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caactctctctgcaatggcagcacgaactcccgcgtctaaagagcacggtgttgctatgg 380
Query: 181 tattcgcgccagggcaggctcagggcaggctgctgaagagcatgcagatgagcagctctt 240
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 381 tattcgcgccagggcaggctcagggcaggctgctaaagagcatgcagatgagcagctctt 440
Query: 241 cctgcctccaccggcg---ccagtgacatccttccagcccctcaccacaatgcccaaagc 297
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctgcctccaccggcggcgccagtgacatccttccagcccctcaccacaatgcccaaagc 500
Query: 298 actaccctcagcccctcgatccactccccacacactgtgttttgtcagctaggactctgt 357
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 actaccctcagcccctcggtccactccccacacactgtgttttgtcagctaggactctgt 560
Query: 358 ctttcctggtgaggaactgacttcctcactgggaatgctgagttggcctttggttaca 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctttcctggtgaggaactgacttcctcactgggaatgctgagttggcctttggttaca 618
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 415
Length of database: 818
Length adjustment: 9
Effective length of query: 406
Effective length of database: 809
Effective search space: 328454
Effective search space used: 328454
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
