NNNNAACTCATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGAT
CCGCGGAATTCTTCCACTATCAGTGAATCAGGCCAAATATGTGATTTAAG
CTGTAGTAATACTTCTTTTAACAAAAGTGGGTGCCCTTGTGTTTGGGGCA
TATATGCTAAGAATTAAAATGCTACCTTGGTGAATTTTTTCCTTTGATGA
GTATATAGTATCTATCCATGTCTCTTTTGCTTAATTTTGATTTGAAGTCT
ATTTTGTTAGATATAAAAATGACTACACCAGCTTACTTCTCTGGTCATTT
GTTTGGAATATCATTTTCCAAACCTTTACTCAAATGTTAATACCAATCCT
TAATATTGAGGTGTGAGGTGTATTTCTTCTCTTTATTTTATTTATTTATT
TATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTT
CAAGACAGGATTTCTCTGTATTGCCCTGGCTGTCCTGGAACTCATTTTGT
AGATCAGGCTGGCCTCAAACTCAGAAATCCTCCTGCCTCTGCCTACCAAG
TTCTGGGATTAAAGGTGTGCACTACCACCGCCCGGTGAGGTGTGTTTTCT
GTGTGTCACAGGATGGATCCTGTTTTTGCAATCATCCTGTTAATTGTGTA
TTTTCATTGGGGAATTAAGAACATTGTTATTGAGCAGTATNCATAACAAT
TATAGTTAATTCTATTATTTTGGTGGCTGCTGTGGA

TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTAGGACATCTAAAACTGCACAAG
GAAACTCTGTCTAAAACCAAACAAAAGATCCACTCCTCTTCGTTTGCCTT
TAATGAATGTGGGCCTCACCTTTATAAAGGGAAAACACTTTCAGGTTTCA
AATCAATTCATTATTTACAATTTTTTTCAGATTTATTTTTATTTGATATG
AATAAGTATTTGTGTGCATGTATTGTGAAGTAAGCCCAAGAGAAACCACC
ACACTAGTATTCTTAATGCCAAATAAAAAGTCTGCTTTGAAGCGGTTTGC
AACCCCATAGGAAAAACAACAATAAAACAAACCAGACCCCCAGAACTCCC
AGGGACTAAGCCATCAACAAAGAAGTACACATGGCTCCAGCTGCCTATGT
AGCAGAGGAATGCCTTGCGGTTCAATGAGAGGAGAGGTCCTTGGTCCTAT
GAAGGCTCTATAGATGCCCCAGTGTAGGGGAATCAAGGGCAGGGAGTTGG
GAGTGAGTAGGTAGGTGGAGGAACACCCTCACAGAAGCAGGTGGGGAGAG
GATGGATAAGGTGTTTCTGGGGAGGGAGGGAGACCAAGAAAGGGGATAAC
ATTTGAAATGTAAATAAAGGAAATATCCAATAAAAACAAAAACAGATGGT
AAATGATAAAGGCCAACACCTGAACTTGTCCTCTGACCTACCTAATCATA
CATCTGAA

Query= MSMg01no486_d09.g1 MSMg01no486_d09.g1 CHROMAT_FILE:
MSMg01no486_d09.g1 PHD_FILE: MSMg01no486_d09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:27 2005
         (611 letters)



>mm_chr1_117557461_117558471
          Length = 1011

 Score =  851 bits (440), Expect = 0.0
 Identities = 456/462 (98%), Gaps = 2/462 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   taggacatctaaaactgcacaaggaaactctgtctaaaaccaaacaaaagatccactcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 taggacatctaaaactgcacaaggaaactctgtctaaaaccaaacaaaagatccactcct 401

                                                                       
Query: 61  cttcgtttgcctttaatgaatgtgggcctcacctttataaagggaaaacactttcaggtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 cttcgtttgcctttaatgaatgtgggcctcacctttataaagggaaaacactttcaggtt 341

                                                                       
Query: 121 tcaaatcaattcattatttacaatttttttcagatttatttttatttgatatgaataagt 180
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 340 tcaaatcaattcattatttacattttttttcagatttatttttatttgatatgaataagt 281

                                                                       
Query: 181 atttgtgtgcatgtattgtgaagtaagcccaagagaaaccaccacactagtattcttaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 atttgtgtgcatgtattgtgaagtaagcccaagagaaaccaccacactagtattcttaat 221

                                                                       
Query: 241 gccaaataaaaagtctgctttgaagcggtttgcaaccccataggaaaaacaacaataaaa 300
           ||||||| |||||||||||||||||||||  |||||||||||||||||||||||||||||
Sbjct: 220 gccaaatgaaaagtctgctttgaagcggt--gcaaccccataggaaaaacaacaataaaa 163

                                                                       
Query: 301 caaaccagacccccagaactcccagggactaagccatcaacaaagaagtacacatggctc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 162 caaaccagacccccagaactcccagggactaagccatcaacaaagaagtacacatagctc 103

                                                                       
Query: 361 cagctgcctatgtagcagaggaatgccttgcggttcaatgagaggagaggtccttggtcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 cagctgcctatgtagcagaggaatgccttgcggttcaatgagaggagaggtccttggtcc 43

                                                     
Query: 421 tatgaaggctctatagatgccccagtgtaggggaatcaaggg 462
           ||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 42  tatgaaggctctatagatgcctcagtgtaggggaatcaaggg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1011
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1001
Effective search space:   601601
Effective search space used:   601601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)