NNNAACTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCATTCAATGTTCTTGTCTTAAAATGGCGGAACTGAGGGTT
TCTAGGGATATTGTACCCAGTCTGAAAGCAGAACAGGATCCTAAATGAAT
AGTTGGGTGTACCAGATGTTTTTAAAATGCAGTTTCCTGTGGGAAAGGGT
CTGGATCTTACCATTATATGCGCTCTAGCCAACATTTTGAAATATTAATG
AGAAACTCTGCATTCTGGAAACAAATTGATTCATCTATGACACGAGGCTT
GTTCTCACCAGTAGGTGTCTCTGTTCCATCATGCTCTGGCCCAAACACAG
CCAGGCTTCTCCTGGACCTACATGTTACATAAAAGGCATCTTTTCTTTAG
AAATCCTATACTTTGGAGAGAAGATATAAACAACTTCTCTTTATTTATAC
TCACTTTGACTCTGAATTTGGCCTTGCTTCACATTGCTGGTTGCTGAAAA
TGTTGGAGGGTGTTTTCAAGATAAACTCCCTTTTCATTCTTTGGTACTTA
AATTAGCCCAGTTGCTAAGCTTTATCTCTGTTAGATAAAACGGTGCATTT
CCGAGAAAAACTGCAATAAATACAGTGTAGGCATGAAGCCCGTTCAGAAG
GCCAGAATCTTCCTCCTAAACAGTTGTTTCCTCTCTGATAAAATGGAGCT
TCGGGTTAGGCTACACAGGTATTCATCTAAAGCATGAA

NNCCCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGAGAGACA
TTTTTAAATAGGGTTATTAGATTGTCTGAGGTCCACCTTCTTGAGTTCTT
TATATATATTGGATATTAGTCCCCTATCTGATTTAGAATAGGTAAAGATC
CTTTCCCAATCTGTTGGTGGCCTTTTTGTCTTATTGACAGTGTCTTTTGC
CTTACAGATGCTTTGCAATTTTATGAGGTCCCATTTGTCAATTCTCAATC
TTACAGCACAAGCCATTGCTGTTCTCTTCAGGAATTTTTCCCCTGTGCCC
ATATCTTCGAGGCTTTTCCCCACTTTCTCCTCTATAAGTTTCACTGTCTC
TGTTTCTATGTGGTGTTCTTTGATCCACTTAGATTTGACCTTAGTACAAG
GAGATAGGAATGGATCAATTCGCATTCTTCTATATGATAACCACCATTTG
GTCCTGCACCATTTGTTGAAAATGCTGTCTTTTTTCCACTGGATGGTTTT
AGCTCCCTTGGCAAAGATCAAGTGACCATAGGTGTGTGGGTTCATTTCTG
GGTCTTCAATTCTAATCCATGGTCTACTTGTCTGTCGCTATACCAGAACC
ATGCAGTTTTTATCACAATTGCAATGTAGTACAGCTTTAGGTTGGGCATA
GTGATTCCAACAGAGGTTCTTTTATGATTGANGATAGTTTTTGCTAT

Query= MSMg01no486_h02.b1 MSMg01no486_h02.b1 CHROMAT_FILE:
MSMg01no486_h02.b1 PHD_FILE: MSMg01no486_h02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:45 2005
         (596 letters)



>mm_chr1_15673284_15674279
          Length = 996

 Score = 1071 bits (554), Expect = 0.0
 Identities = 590/618 (95%), Gaps = 25/618 (4%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcattcaatgttcttgtcttaaaatggcggaactgagggtttctagggatattgt 63
           ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 909 ggaattcattcaatgctgttgtcttaaaatggcggaactgagggtttctagggatattgt 850

                                                                       
Query: 64  acccagtctgaaagcagaacaggatcct-------------------------aaatgaa 98
           ||||||||||||||||||||||||||||                         |||||||
Sbjct: 849 acccagtctgaaagcagaacaggatcctaacagctgtctgtgtttgagtttggaaatgaa 790

                                                                       
Query: 99  tagttgggtgtaccagatgtttttaaaatgcagtttcctgtgggaaagggtctggatctt 158
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 tagttgggtgtaccagatgtttttaaaatgcagtttcctgtgggaaagggtctggatctt 730

                                                                       
Query: 159 accattatatgcgctctagccaacattttgaaatattaatgagaaactctgcattctgga 218
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 accattatatgcgctccagccaacattttgaaatattaatgagaaactctgcattctgga 670

                                                                       
Query: 219 aacaaattgattcatctatgacacgaggcttgttctcaccagtaggtgtctctgttccat 278
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 aacaaattgattcatctatgacacgaggcttgttctcaccagtaggtgtctctgttccat 610

                                                                       
Query: 279 catgctctggcccaaacacagccaggcttctcctggacctacatgttacataaaaggcat 338
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 catgctctggcccaaacacagccaggcttctcctggacctacatgttacataaaaggcat 550

                                                                       
Query: 339 cttttctttagaaatcctatactttggagagaagatataaacaacttctctttatttata 398
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 cttttctttagaaatcctatactttggagagaagatataaacaacttctctttatttata 490

                                                                       
Query: 399 ctcactttgactctgaatttggccttgcttcacattgctggttgctgaaaatgttggagg 458
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 ctcactttgactctgaatttggccttgcttcacattgctggttgctgaaaatgttggagg 430

                                                                       
Query: 459 gtgttttcaagataaactcccttttcattctttggtacttaaattagcccagttgctaag 518
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 gtgttttcaagataaactcccttttcattctttggtacttaaattagcccagttgctaag 370

                                                                       
Query: 519 ctttatctctgttagataaaacggtgcatttccgagaaaaactgcaataaatacagtgta 578
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 ctttatctctgttagataaaacggtgcatttccgagaaaaactgcaataaatacagtgta 310

                             
Query: 579 ggcatgaagcccgttcag 596
           ||||||||||||||||||
Sbjct: 309 ggcatgaagcccgttcag 292


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 996
Length adjustment: 10
Effective length of query: 586
Effective length of database: 986
Effective search space:   577796
Effective search space used:   577796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)