GGGGGGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAG
GATCCGCGGAATTCTCACCTGATTACTACCGAATGGCAGAGAAGCACCTG
AAAAAATGCTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAAC
CCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAG
GTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGCACACTCCTCCAT
TGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAGATCAGTCTGGCG
GTTCCTCAGAAAACTGGATATAGTACTACCGGAGGATCCAGCAATACCTC
TCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGC
TCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAGGA
ACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAGATGTGGTACATCT
ACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTC
CTGGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACA
TTCACAAAGGAACTCACACAATATGTACTCACTGATAAGTGGATATTAGC
CCAAAACCTAAGATACCCAAGATATAAGATACAATTTCCTAAACACATGA
AACTTCAGAAAAATGAAGACTGAAGTGTGAACACTATGCCCC

ACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTTTTCTTAAAAACTGAAATCAACCC
TGCTAAGATTTTTAATTTATTGAAAGTCAAATTAAAATATTAATTAGAAT
ACTAATTACATGAGATTTAACTTAGCAGGTTTTTGGCCTTTTCTGTTGCT
ATTGCTTTAATTGATGTTTCCATTGGCAAATATTGGAAATTACTTGTAAA
TTAGAAAGTGGTAAATATAATGGGGTCAATTAATGATAGGTACCATGTCA
GAGTAAATTGATATTCACAAAAACAATTTCTCTGAAGTCCTTAATTGTAT
ATTAGACAAGTCTTTCTTGAGTTTTGGAGTGCTCCTTTGAAAACTAAGAC
TTTTATCTAAAGCTTCAGAAAGTATTAGTGGTCAACAAGATCTAATTGTG
GGCATAGTGTTGAAGCTGGTGTATTACAAGTAGCATGCTTGAATGTCTTA
CAAACATTTGTCATTTTTCTTTCACATGTATATTTCTCTCAGTGGGGAAC
AGATACTACAGGGCCTTAAAAATGATTTAATTCTTAACACTAAAATCTTA
GCAGCTGTGAGCTGTTCTACAACACAAACCATAGCACACAAGTCAAGATG
TGAAGTACCCCAGTGAGAAATCTGAATTCCAAAGAAGATACTATAAAATG
AGGAACCTTGCAAATGACAAGTATGTAGCATTCCTCTTTGCTATCCATTT
CTN

Query= MSMg01no486_i01.g1 MSMg01no486_i01.g1 CHROMAT_FILE:
MSMg01no486_i01.g1 PHD_FILE: MSMg01no486_i01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:50 2005
         (674 letters)



>mm_chr1_96335352_96336426
          Length = 1075

 Score = 1154 bits (597), Expect = 0.0
 Identities = 627/647 (96%), Gaps = 16/647 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttttcttaaaaactgaaatcaaccctgctaagatttttaatttattgaaagtcaaatta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 cttttcttaaaaactgaaatcaaccctgctaagatttttaatttattgaaagtcaaatta 588

                                                                       
Query: 61  aaatattaattagaatactaattacatgagatttaacttagcaggtttttggccttttct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 587 aaatattaattagaatactaattacatgagatttaacttagcaggtttttgtccttttct 528

                                                                       
Query: 121 gttgctattgctttaattgatgtttccattggcaaatattggaaattacttgtaaattag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 gttgctattgctttaattgatgtttccattggcaaatattggaaattacttgtaaattag 468

                                                                       
Query: 181 aaagtggtaaatataatggggtcaattaatgataggtaccatgtcagagtaaattgatat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 aaagtggtaaatataatggggtcaattaatgataggtaccatgtcagagtaaattgatat 408

                                                                       
Query: 241 tcacaaaaacaatttctctgaagtccttaattgtatattagacaagtctttcttgagttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 tcacaaaaacaatttctctgaagtccttaattgtatattagacaagtctttcttgagttt 348

                                                                       
Query: 301 tggagtgctcctttgaaaactaagacttttatctaaagcttcagaaagtattagtggtca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 347 tggagtgctcctttgaaaactaagacttttatctaaagcttcagaaagtattagtggtcc 288

                                                                       
Query: 361 acaagatctaattgtgggcatagtgttgaagctggtgtattacaagtagcatgcttgaat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 acaagatctaattgtgggcatagtgttgaagctggtgtattacaagtagcatgcttgaat 228

                                                                       
Query: 421 gtcttacaaacatttgtcat----------------ttttctttcacatgtatatttctc 464
           ||||||||||||||||||||                ||||||||||||||||||||||||
Sbjct: 227 gtcttacaaacatttgtcatgttttctgcatcccaattttctttcacatgtatatttctc 168

                                                                       
Query: 465 tcagtggggaacagatactacagggccttaaaaatgatttaattcttaacactaaaatct 524
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 tcagtggggaacagatactacagggccttaaaaatgatttaattcttaacactaaaatct 108

                                                                       
Query: 525 tagcagctgtgagctgttctacaacacaaaccatagcacacaagtcaagatgtgaagtac 584
           ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||
Sbjct: 107 tagcagctgtgagctgttctacaacacaaaccatagcacacaagtcaagacatgaagtac 48

                                                          
Query: 585 cccagtgagaaatctgaattccaaagaagatactataaaatgaggaa 631
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47  cccagtgagaaatctgaattccaaagaagatactataaaatgaggaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1075
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1065
Effective search space:   707160
Effective search space used:   707160
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)