Query= MSMg01no486_i14.b1 MSMg01no486_i14.b1 CHROMAT_FILE:
MSMg01no486_i14.b1 PHD_FILE: MSMg01no486_i14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:52 2005
(527 letters)
>mm_chr1_36721922_36722850
Length = 929
Score = 905 bits (468), Expect = 0.0
Identities = 507/524 (96%), Gaps = 11/524 (2%)
Strand = Plus / Minus
Query: 10 cttcatcgtgttccgaaagaaggcagcaaggaagaagctcttgttgcacactgggggagc 69
|||||||||| || ||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct: 929 cttcatcgtgatcagaaagaaggcagcaaggaagaagctctcgttgcacact-ggggagc 871
Query: 70 ctgagcataggaaagctgaaagcccacccccacagggacacacttcttccaacaaggcca 129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 870 ctgagcataggaaagctgaaagcccacccccacagggacacacttcttccaacaaggcca 811
Query: 130 cacctcctagtagtgtcactcccatgggccaagctttcaaacacaggagtctatggggac 189
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 810 cacctcctagtagtgtcactcccatgggccaagcattcaaacacaggagtctatggggac 751
Query: 190 attcctattcaaaccaccacaatcccttttaatgtttgtctttcctttgaatcagacaga 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 attcctattcaaaccaccacaatcccttttaatgtttgtctttcctttgaatcagacaga 691
Query: 250 gtgttagggagtagaaagtgtgacaacacagacagcattcgattcttaggctggtgcact 309
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 690 gtgttagggagtagaaagtgtgacaacacggacagcattcgattcttaggctggtgcact 631
Query: 310 gccgcctcgcacaaggactctgagccgagcacccagctgagtgcccacatgccagcccac 369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 gccgcctcgcacaaggactctgagccgagcacccagctgagtgcccacatgccagcccac 571
Query: 370 cgttgaatgttctacatgcatctttagtaagcctcagtgcggccctagctg------gtt 423
||||||| |||| |||||||||||||||||||||||||||||||||||||| | |
Sbjct: 570 cgttgaa-gttccacatgcatctttagtaagcctcagtgcggccctagctgcactgag-t 513
Query: 424 gctgcagaagtagtcccaatccagagtgctaactcagccatgactgtttcaaaacaactc 483
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 512 gctgcagaagtagtcccaatccagagtgctaactcagccatgactgtttc--aacaactc 455
Query: 484 ttgcttgactggttgccgtcaaagcctctgaactctcaatgacc 527
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 ttgcttgactggttgccgtcaaagcctctgaactctcaatgacc 411
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 929
Length adjustment: 10
Effective length of query: 517
Effective length of database: 919
Effective search space: 475123
Effective search space used: 475123
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no486_i14.g1 MSMg01no486_i14.g1 CHROMAT_FILE:
MSMg01no486_i14.g1 PHD_FILE: MSMg01no486_i14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:52 2005
(356 letters)
>mm_chr1_36552653_36553408
Length = 756
Score = 619 bits (320), Expect = 0.0
Identities = 347/356 (97%), Gaps = 1/356 (0%)
Strand = Plus / Plus
Query: 1 attctctcctttggagcaggcttcaagtccaatcagaaatgcctggttaccttgaatagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 attctctcctttggagcaggcttcaagtccaatcagaaatgcctggttaccttgaatagt 261
Query: 61 caactgctgttgcagccggggacacatcttggctggcaggctgcttcagcagtggccagt 120
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 262 cgactgctgttgcagccggggacacatcttggctggcaggctgcttcagcag-ggccagt 320
Query: 121 gatggttaagccgctgctgccctctcttcccggtagtctactttacatggcatatcagca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatggttaagccgctgctgccctctcttcccggtagtctactttacatggcatatcagca 380
Query: 181 gtacagaaactccgaaatgactaactctgacatgctgcttctcatgtctgcagcccgtct 240
|||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 381 gtacagaaactctgaaatgactaactctggcatgctgcttctcatgtctgcagcccgtct 440
Query: 241 ccttttctctctgtctctgcagctgagtggatgaagaggagtagagtgagaggaggcccc 300
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 441 ccttccctctctgtctctgcagctgagtggatgaagaggagtagagtgagaggaggccgc 500
Query: 301 tggctgcatctgagccttgctaactgaaaggacaaaatggagctgtcttgagcaga 356
||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 501 tggcttcatctgagccttgctaactgaaaggacagaatggagctgtcttgagcaga 556
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 356
Length of database: 756
Length adjustment: 9
Effective length of query: 347
Effective length of database: 747
Effective search space: 259209
Effective search space used: 259209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
