Query= MSMg01no486_k21.b1 MSMg01no486_k21.b1 CHROMAT_FILE:
MSMg01no486_k21.b1 PHD_FILE: MSMg01no486_k21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:03 2005
(698 letters)
>mm_chr1_61954838_61955935
Length = 1098
Score = 1328 bits (687), Expect = 0.0
Identities = 693/695 (99%)
Strand = Plus / Plus
Query: 4 gaattcaataaatttataccaatataagttagtcactcattttaccagattttcaattat 63
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattcaataaatttaaactaatataagttagtcactcattttaccagattttcaattat 263
Query: 64 atcacagtcatctctttattatatggtaagatctctgtcagacccaagtatccaaatata 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 atcacagtcatctctttattatatggtaagatctctgtcagacccaagtatccaaatata 323
Query: 124 tcatgtctgtttaaaacacatttgtttattacatcaattagaattattaagcagttttat 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tcatgtctgtttaaaacacatttgtttattacatcaattagaattattaagcagttttat 383
Query: 184 ggttcagaacagttattgcttttagctgtcacaaaatcacgcattgttttcatcttagca 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ggttcagaacagttattgcttttagctgtcacaaaatcacgcattgttttcatcttagca 443
Query: 244 gtattcacatgacttcatctgcatatttcaaccaaaaatatttttttggaaagagggtct 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gtattcacatgacttcatctgcatatttcaaccaaaaatatttttttggaaagagggtct 503
Query: 304 ctagtatttcttccatactggccacaaaattatgttgcttctaggtcagacatccatgtg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ctagtatttcttccatactggccacaaaattatgttgcttctaggtcagacatccatgtg 563
Query: 364 ctagaattacatgtgtgtctgtcacatctaactcctaaaactgatactcactagagtttt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ctagaattacatgtgtgtctgtcacatctaactcctaaaactgatactcactagagtttt 623
Query: 424 tttctttttatgacttttagctgatatttattaaatgcctagcatatgtgctcatttgtg 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tttctttttatgacttttagctgatatttattaaatgcctagcatatgtgctcatttgtg 683
Query: 484 ttattagcactggggcctaggatggtgacctttattttatatctcacaaatagagaccaa 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ttattagcactggggcctaggatggtgacctttattttatatctcacaaatagagaccaa 743
Query: 544 aacaaactagtcccgagaaatataaatggagagaatttggaagaaattgaatgagtttat 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 aacaaactagtcccgagaaatataaatggagagaatttggaagaaattgaatgagtttat 803
Query: 604 ataattttaaaagtaaatggtggtggtaagctcctgctctattgttaggattaaggtcac 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 ataattttaaaagtaaatggtggtggtaagctcctgctctattgttaggattaaggtcac 863
Query: 664 tcaatgagaggatgatcatacctgctcatggaaag 698
|||||||||||||||||||||||||||||||||||
Sbjct: 864 tcaatgagaggatgatcatacctgctcatggaaag 898
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 698
Length of database: 1098
Length adjustment: 10
Effective length of query: 688
Effective length of database: 1088
Effective search space: 748544
Effective search space used: 748544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no486_k21.g1 MSMg01no486_k21.g1 CHROMAT_FILE:
MSMg01no486_k21.g1 PHD_FILE: MSMg01no486_k21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:03 2005
(597 letters)
>mm_chr1_62133436_62134431
Length = 996
Score = 1004 bits (519), Expect = 0.0
Identities = 588/623 (94%), Gaps = 27/623 (4%)
Strand = Plus / Minus
Query: 1 agttttgtaaactgcagaactctagaggcagtgatgatagaggcatggctgtgaatgaat 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 689 agttttgtaaactgcagaactctagaggcagtgatgatagaggcacggctgtgaatgaat 630
Query: 61 gtacttaaaaccctgacctgaacacttaaatgcttcagatgacaaagaccatgtgtgtct 120
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct: 629 gtacttaaaaccctgacctggacacttaaatgcttcagatgacaaagaccatgtgcgtct 570
Query: 121 ttccatgaccttagaaggaaaggagttttcatagactgtcataagaagaaatgtagtaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 569 ttccatgaccttagaaggaaaggagttttcatagactgtcataagaagaaatgtagtgga 510
Query: 181 cattttggaagctctgaaaaagggattttaaggcaaaaaaaatcatatggggtgtgtgtg 240
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 509 cattttggaagctctgaaaaagggattttaaggc-aaaaaaatcatatggggtgtgtgtg 451
Query: 241 tatatgagtctacccatctattatagataaataatagtcttactcatgaatacatagaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 tatatgagtctacccatctattatagataaataatagtcttactcatgaatacatagaga 391
Query: 301 acattgttttattgactgagcaccactaacctgataacccaagtggaaaagcttgcccct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 acattgttttattgactgagcaccactaacctgataacccaagtggaaaagcttgcccct 331
Query: 361 caattcctgtgagtaggctacagc-aaaaaaaaaaaaaaaaaaaaatcagattatttaaa 419
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 330 caattcctgtgagtaggctacagcaaaaaaaaaaaaaaaaaaaaaatcagattatttaaa 271
Query: 420 tgttgaatacaactgctgtaggttgtgtatctaaggtgcttagaaaacaaataaatttaa 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 tgttgaatacaactgctgtaggttgtgtatctaaggtgcttagaaaacaaataaatttaa 211
Query: 480 tgcttagtatcaggcctagttcttaagattatatatatatata-----------a---aa 525
||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 210 tgcttagtatcaggcctagttcttaagattatatatatatatatatatatatatatttaa 151
Query: 526 gattatatatataa------aaga--ttatatatatata-aaagat-tatatatatatat 575
||||||||||||| || | ||||||||||||| | | || |||||||||||||
Sbjct: 150 tattatatatataatattttaatattttatatatatatatatatatatatatatatatat 91
Query: 576 -tatgaatgaaattatttcggca 597
||||||||||||||||||||||
Sbjct: 90 gtatgaatgaaattatttcggca 68
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 79
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 996
Length adjustment: 10
Effective length of query: 587
Effective length of database: 986
Effective search space: 578782
Effective search space used: 578782
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
