NNGGAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XGCGCGGAATTCTTCGCTTTGCAAGGAGAATACCTGGCCCAGCAGCAGGG
GATAAACACTTCAGAGCCTAGAAACTTTAGAAAAGGAAAGTTAGATTCCT
TTCATTCTTCAAGTTCAGCACTACATAATACTGGCTAAAAATGACACTGT
CTAGGTAAATCTAGCAGCAGCCGGAGCTGTCAAGTTAAACATGCCATAGG
ACTGCCATCTACCTCCACATACTAAAGGAACAAAACATGCTCTTTTTCAA
CTGGCTGACCATTAGCTATGCTGCCAAGCTAAACACCATCAACAATAGCT
CCTGAATCTGCCTTCTTTTCAACTGTGTATGTGTGCAGACAGACCTCTAA
AAGCTCATGTCAGTCTTCGTAACATAATAAATGCATGTCTTCTGATGCCT
GAGCAGATTTAAGTTTTGGGTTTTGGTTGGTCCTGCCCCTATTCAGTGGG
ATTGCTCCATGTATCAAGCCTAACAACCAATTCCAACAAGGAGTAAAGTA
TTCCCCTTTGTGTTGTGTGTCTGGGTAGCAGCTCTCCTTTGTGTTGTGGA
TATCCTTGAAAATGCGAACGCTGGTGGGTAATAATCTGCGTGAGGCAAGA
AGGAACTCCAGTTCAGCATGACTCAACTGATGCTGACTCTAGAGTCTGAC
CCTGAGTACTTTGATTTTGACTAAGGGATTTATTTAT

NTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCTTTGCAATTTGTATCCC
TTTGACATTCTCTTGCTCTCTAATTGCTCTAGCTAGAACTTCAAGAACAA
TATTAAATAGATAGGGAAAGAGTGGGCACCCTTGTCTAGTCTCTGATTTT
AGTGGGATTGCCTCAAGTTTCTCTCCACTTAGTCTGATGTTGGCTACTGG
TTTGCTATATATTGCTTGTACTATGTTTAGGTATGGACCTTGAATTCCTG
ATCTTTCCAAGACTTTTAACATGAAGGGATGCTGAATTTTGTCAAAAACT
TTTTCAGCATCTAATGAAATGATCCTGTGTTTTTTATTCTTTGAGTTTGT
TTATGTAGTGGATTACATTGATAGATTTCCATGCATTGAACCATCCCTGC
ATCCCTGGGATGAAGCCTACTTGGTCATGGTGAATGATCATTTGATGTGT
TCTTGGATTCGGTTGGCAAGAATTTTTATTTTTGTATCAGTGTTCATAAG
AGAGATTGGTCTGAAGTTTGCTTTCTTTTTTTTATGAGCTCATTTATTTT
ATTTTTTTTATTATGTATTTTTCTCAATTACATTTCCAATGCTATCCCAA
AAGTCCTCCCCCCCCCATTCCCCTACCCACCCATTCCCATTTTTTGGCCC
TGGCGTTCCCCTGTACTGGGGCATATAAAGTTTGCCTGACCAATGG

Query= MSMg01no486_p09.b1 MSMg01no486_p09.b1 CHROMAT_FILE:
MSMg01no486_p09.b1 PHD_FILE: MSMg01no486_p09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:25 2005
         (659 letters)



>mm_chr1_141197920_141198978
          Length = 1059

 Score = 1259 bits (651), Expect = 0.0
 Identities = 657/659 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagaatacctggcccagcagcaggggataaacacttcagagcctagaaactttagaaaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gagaatacctggcccagcagcaggggataaacacttcagagcctagaaactttagaaaag 260

                                                                       
Query: 61  gaaagttagattcctttcattcttcaagttcagcactacataatactggctaaaaatgac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaagttagattcctttcattcttcaagttcagcactacataatactggctaaaaatgac 320

                                                                       
Query: 121 actgtctaggtaaatctagcagcagccggagctgtcaagttaaacatgccataggactgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actgtctaggtaaatctagcagcagccggagctgtcaagttaaacatgccataggactgc 380

                                                                       
Query: 181 catctacctccacatactaaaggaacaaaacatgctctttttcaactggctgaccattag 240
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catctacctccacgtactaaaggaacaaaacatgctctttttcaactggctgaccattag 440

                                                                       
Query: 241 ctatgctgccaagctaaacaccatcaacaatagctcctgaatctgccttcttttcaactg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctatgctgccaagctaaacaccatcaacaatagctcctgaatctgccttcttttcaactg 500

                                                                       
Query: 301 tgtatgtgtgcagacagacctctaaaagctcatgtcagtcttcgtaacataataaatgca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtatgtgtgcagacagacctctaaaagctcatgtcagtcttcgtaacataataaatgca 560

                                                                       
Query: 361 tgtcttctgatgcctgagcagatttaagttttgggttttggttggtcctgcccctattca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgtcttctgatgcctgagcagatttaagttttgggttttggttggtcctgcccctattca 620

                                                                       
Query: 421 gtgggattgctccatgtatcaagcctaacaaccaattccaacaaggagtaaagtattccc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtgggattgctccatgtatcaagcctaacaaccaattccaacaaggagtaaagtattccc 680

                                                                       
Query: 481 ctttgtgttgtgtgtctgggtagcagctctcctttgtgttgtggatatccttgaaaatgc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctttgtgttgtgtgtctgggtagcagctctcctttgtgttgtggatatccttgaaaatgc 740

                                                                       
Query: 541 gaacgctggtgggtaataatctgcgtgaggcaagaaggaactccagttcagcatgactca 600
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gaacgctggcgggtaataatctgcgtgaggcaagaaggaactccagttcagcatgactca 800

                                                                      
Query: 601 actgatgctgactctagagtctgaccctgagtactttgattttgactaagggatttatt 659
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 actgatgctgactctagagtctgaccctgagtactttgattttgactaagggatttatt 859


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1059
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1049
Effective search space:   680801
Effective search space used:   680801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)