BAC Information

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BAC

Clone NameMSMg01-486P23
Chromosome1 (Build37)
Map Location 36,550,120 - 36,714,493
singlet/doubletdoublet
Overlap geneCnnm4, Cnnm3, Ankrd23, Ankrd39, Sema4c, 1700024G10Rik, BC050210, EG623414
Upstream geneLOC100041544, LOC666283, LOC100041091, EG666290, Hs6st1, Ugcgl1, LOC100041123, Lincr, Arid5a, 4632411B12Rik, 4930533C12Rik, Lman2l
Downstream geneCox5b, Actr1b, 4933424G06Rik, Zap70, Tmem131, EG241053, A230074B11Rik, 4921511C04Rik, Cnga3, Inpp4a, 6330578E17Rik, Unc50, Mgat4a, 2010300C02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-486P23.T7 (MSMg01no486_p23.b1)MSMg01-486P23.TJ (MSMg01no486_p23.g1)
ACCAG566068AG566069
length858855
length of high quality
(start - end)		155 (55 - 209)196 (78 - 273)
definitionCHROMAT_FILE: MSMg01no486_p23.b1 PHD_FILE: MSMg01no486_p23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:09:28 2005CHROMAT_FILE: MSMg01no486_p23.g1 PHD_FILE: MSMg01no486_p23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:09:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,714,350 - 36,714,493)(36,550,120 - 36,550,315)
sequence
TGTGAAGGATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCCATCTCAGATCCCAATGCCTCTTGATAACCCTCTAC
CTGTCTGCAGAAGTGTTTCTCTGAAATCTACATTTCCACATGAGTTTGGA
AAGGACAGGCCACATTCAGGGCATAGCAGGGAGAAGGGTGTTGGGGGGGG
GGCGGNNNCNNNCNANNANNGNTCTNNNNNNNCNNNNNNANNNGNNNNNN
NNNNTNNCNNNNTTNNNNNCNNCCANANCTNNCCCCANCCTCTTTTCTCT
CCCTGACACCCCTCTATAACACACTCCTACCTTCTGCATTACTTTACCCA
CACCTTTTAACTAAACAATATTGTGTTTTTATGACATGATAGATTTTTCG
TCTCTCTTTTTTTTTAATCTTCTGTTATTTCCCCCCCACCCCATCCTTCA
CTCGAACGCAACCATATTCCTCATCTCACACACATTACTACCCATTTTTT
TGTCTCCACTGCGACTTTTTTTACCCCGGTTATGTGGGTCTGCATTTTGT
TTGATTACTCTCTCTCTCTTTTGATTCCTTTACATCTCCACGTAATACAT
TTTATTATTCATTTTCTCACCACAATATATATTTCTATGTACAATATTAC
CTCTATACTCTCTCCTTCTCCTACCTCTGTTTAATGTTATATTCCCGCTT
CTCCTCCCTTATTACACTTTTATTGACTATCGCAGACCGCCTATTATCCT
ATTCTCCGATTATTTTTCAAGCTTGTATGCNCCTCTATTGACATATTCGT
CTTCCTGTATTTCTTTACTTCTATTTCGCCATTACTTTCACNCTTCTTAT
CCTCCTCT

TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAAGGTGAACTTGGCCTACATGAG
ACCCTGTCTCAGAAAACTGAACTAAACAAAACCAGATGCGACACGGGAAA
GCTGGAAGCAAAGGGTGTCGCCGAGGGACTTGGGTTATAGGTTCTTTCTC
CCTCTGCCTCCACCTTTTAACCCCTTCCGTGTGAATCAGGGCCATAGGGC
AGGGGTGGGGTAGGGTGGGGTGGNNNNNNNNNNNNNNNNNNNNNNTNNNN
NNTNNNNNNTNTNCCNCCCCCCCCTTTTTTCTTTTTTTCCTTTCTTTCTT
TCTCCTCCTTTTTTCTTCCTTTTTCTTTTCCCTCCTTTTTCCTTCTTTTT
TCCTTTTTTTTTTTTTTTTTTCCCCCCCCCCCTTTTCCCTTTTTTTTTTC
CCTTTCTCCCCCCTTCTTCTCCTTCTCTCCTTCTTTTTCCTCTTTCCTCT
CCTTCTCTTCTTTCCTTCTCTTTCTTTTCTCTTCTCTTCCCCTTTTCTTT
TCTCTTCCCTCTTTCTCCTTCCTCTTTTCTTCCCTTTTCCCCTCTTTTTT
TTCCCCCTTCTTCTCTCTCCTTTCCCTCTCTTTTCCTTTTTCTTTTNCCN
CCTTTTCTTTTCTTTTTTTTACTCCTTTATCTTTCCCCTTTTTCCCTTTC
TCTTTTTCTACTTTAATCCCTTTTACTCCCCTTTATTTTTATTTCTTCCC
CCTCTTTCCCTATTTTTTTTTCCCCCTTCTTGCTATTTCTGCTTTTCCCC
CCTTTTCCCTTTTCTTTTCTTTTCCCTTTCTTTTCCTCCCCTTTATCCTC
TCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no486_p23.b1 MSMg01no486_p23.b1 CHROMAT_FILE:
MSMg01no486_p23.b1 PHD_FILE: MSMg01no486_p23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:28 2005
         (155 letters)



>mm_chr1_36714146_36714700
          Length = 555

 Score =  263 bits (136), Expect = 3e-75
 Identities = 142/144 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccatctcagatcccaatgcctcttgataaccctctacctgtctgcagaagtgttt 64
           ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 348 gaattccatctcagagcccaatgcctcttgatagccctctacctgtctgcagaagtgttt 289

                                                                       
Query: 65  ctctgaaatctacatttccacatgagtttggaaaggacaggccacattcagggcatagca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 ctctgaaatctacatttccacatgagtttggaaaggacaggccacattcagggcatagca 229

                                   
Query: 125 gggagaagggtgttgggggggggg 148
           ||||||||||||||||||||||||
Sbjct: 228 gggagaagggtgttgggggggggg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 155
Length of database: 555
Length adjustment: 8
Effective length of query: 147
Effective length of database: 547
Effective search space:    80409
Effective search space used:    80409
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no486_p23.g1 MSMg01no486_p23.g1 CHROMAT_FILE:
MSMg01no486_p23.g1 PHD_FILE: MSMg01no486_p23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:28 2005
         (196 letters)



>mm_chr1_36549920_36550515
          Length = 596

 Score =  371 bits (192), Expect = e-107
 Identities = 195/196 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaggtgaacttggcctacatgagaccctgtctcagaaaactgaactaaacaaaaccagat 60
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaggtgaacttggcctatatgagaccctgtctcagaaaactgaactaaacaaaaccagat 260

                                                                       
Query: 61  gcgacacgggaaagctggaagcaaagggtgtcgccgagggacttgggttataggttcttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcgacacgggaaagctggaagcaaagggtgtcgccgagggacttgggttataggttcttt 320

                                                                       
Query: 121 ctccctctgcctccaccttttaaccccttccgtgtgaatcagggccatagggcaggggtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctccctctgcctccaccttttaaccccttccgtgtgaatcagggccatagggcaggggtg 380

                           
Query: 181 gggtagggtggggtgg 196
           ||||||||||||||||
Sbjct: 381 gggtagggtggggtgg 396


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 196
Length of database: 596
Length adjustment: 8
Effective length of query: 188
Effective length of database: 588
Effective search space:   110544
Effective search space used:   110544
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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