Query= MSMg01no487_a23.b1 MSMg01no487_a23.b1 CHROMAT_FILE:
MSMg01no487_a23.b1 PHD_FILE: MSMg01no487_a23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:33 2005
(632 letters)
>mm_chr1_84102917_84103948
Length = 1032
Score = 1178 bits (609), Expect = 0.0
Identities = 624/629 (99%)
Strand = Plus / Plus
Query: 4 ggaattccaggccattctggatagactacagaatgagattctgtctcaaaaaagcaaaac 63
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 204 ggaattccaggccattctggatagactacagaatgagattctgtctcaaaaaatcaaaac 263
Query: 64 agtgaagaacaaagaaaaacattgcagtgaaagtcaccataataatttgacagccaaatc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agtgaagaacaaagaaaaacattgcagtgaaagtcaccataataatttgacagccaaatc 323
Query: 124 atttacgcgagcagattctttgaaccgtcaaggtaaagcattgaaggatatttgagatac 183
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 324 atttacgcgagcagattctttgaaccttcaagataaagcattgaaggatatttgagatac 383
Query: 184 acatgaactcaaatctttatgctgcagaagtccctgggttctttctaatgcacagtgcat 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 acatgaactcaaatctttatgctgcagaagtccctgggttctttctaatgcacagtgcat 443
Query: 244 ttgtgtgttcgtggcaaggaatcagaaaaacaacatgaacatttccaggcaattaaagaa 303
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 444 ttgtgtgttcgtggcaaggaatcagaaaaacaacatgaaaatttccaggcaattaaagaa 503
Query: 304 gaaaagcccttgtgtgccagaagcacacttgtgactgtgctggaagatgtgtactgattc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gaaaagcccttgtgtgccagaagcacacttgtgactgtgctggaagatgtgtactgattc 563
Query: 364 ccatgtgggacaatcccagacacaagctgcatcataacctcccacccgctgccttgccag 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ccatgtgggacaatcccagacacaagctgcatcataacctcccacccgctgccttgccag 623
Query: 424 cgtgtccttgctgccgcagaaggtattgggcaagaagagatggatggttagaatcactcc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 cgtgtccttgctgccgcagaaggtattgggcaagaagagatggatggttagaatcactcc 683
Query: 484 caatagcaaccttaaatcactctgagtactgagaggcatagcagagacatatttcaacag 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 caatagcaaccttaaatcactctgagtactgagaggcatagcagagacatatttcaacag 743
Query: 544 aaagcagatgtgatatctattttcctttccccttctccccttgccaccaatgtactctat 603
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 744 aaagcagatgtgatatctattttccttcccccttctccccttgccaccaatgtactctat 803
Query: 604 atttctctttagaacacatgcatccaaaa 632
|||||||||||||||||||||||||||||
Sbjct: 804 atttctctttagaacacatgcatccaaaa 832
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1032
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1022
Effective search space: 635684
Effective search space used: 635684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no487_a23.g1 MSMg01no487_a23.g1 CHROMAT_FILE:
MSMg01no487_a23.g1 PHD_FILE: MSMg01no487_a23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:33 2005
(700 letters)
>mm_chr1_84297636_84298735
Length = 1100
Score = 677 bits (350), Expect = 0.0
Identities = 377/396 (95%), Gaps = 17/396 (4%)
Strand = Plus / Minus
Query: 1 cattaaagtgtgaccatgtgtttggaatgagacactttcaggaaaatctgttaaaataga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 cattaaagtgtgaccatgtgtttggaatgagacactttcaggaaaatctgttaaaataga 320
Query: 61 tggaaccaccactagctatatgacagctaggttttcagcaactgaaagtttggtgtttca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tggaaccaccactagctatatgacagctaggttttcagcaactgaaagtttggtgtttca 260
Query: 121 ggggatagaatggtaatttctgtcttagtgatttatctatcttacattagtgtataggtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 ggggatagaatggtaatttctgtcttagtgatttatctatcttacattagtgtataggtt 200
Query: 181 gtctgtctgtcgatctattatatctatgtctgttatcatctatctatctatctatctatc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 gtctgtctgtcgatctattatatctatgtctgttatcatctatctatctatctatctatc 140
Query: 241 tatctatctatctatctatctatctatctatctatctatctatctatctatctatctatc 300
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139 tatctatctatctatctatctatctatctatctatctatctatctatct----------- 91
Query: 301 tgtctgttatcataaatctatctatctatctatctatctatctatctatctatctatcta 360
||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||
Sbjct: 90 -gtctgttatcatagatctatctatcaatc-----atctatctatctatctatctatcta 37
Query: 361 tctatctatctatctatctatctatctaatctataa 396
||||||||||||||||||||||||||||||||||||
Sbjct: 36 tctatctatctatctatctatctatctaatctataa 1
Score = 143 bits (74), Expect = 4e-38
Identities = 77/78 (98%), Gaps = 1/78 (1%)
Strand = Plus / Minus
Query: 592 ttatctatctatctatctatctatctatctatctatctatctatctatctatctatctat 651
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 ttatc-atctatctatctatctatctatctatctatctatctatctatctatctatctat 109
Query: 652 ctatctatctatctatct 669
||||||||||||||||||
Sbjct: 108 ctatctatctatctatct 91
Score = 137 bits (71), Expect = 2e-36
Identities = 137/163 (84%), Gaps = 20/163 (12%)
Strand = Plus / Minus
Query: 532 tatcatgtatctggcatctat-tgatc-atctat-tatctatctat-tttttatccctca 587
|||||| ||||| |||||| | ||| |||||| ||||||||||| | | ||| || |
Sbjct: 166 tatcatctatct---atctatct-atctatctatctatctatctatctatctat--ct-a 114
Query: 588 tctat-tatctatctatctatctatc---tatc-t--atctatctatctatctatctatc 640
||||| ||||||||||||||||| || |||| | ||||||||||| ||| |||||||
Sbjct: 113 tctatctatctatctatctatctgtctgttatcatagatctatctatcaatc-atctatc 55
Query: 641 tatctatctatctatctatctatctatct-tctatatatctat 682
||||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 54 tatctatctatctatctatctatctatctatctatctatctat 12
Score = 136 bits (70), Expect = 8e-36
Identities = 94/106 (88%), Gaps = 11/106 (10%)
Strand = Plus / Minus
Query: 558 atctattatctatctat-t-ttttatccctcatctattatctatctatctatctatctat 615
|||||||| ||||||| | | ||| ||||| |||||||||||||||||||||||
Sbjct: 187 atctatta--tatctatgtctgtta----tcatc---tatctatctatctatctatctat 137
Query: 616 ctatctatctatctatctatctatctatctatctatctatctatct 661
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 ctatctatctatctatctatctatctatctatctatctatctatct 91
Score = 134 bits (69), Expect = 3e-35
Identities = 136/161 (84%), Gaps = 17/161 (10%)
Strand = Plus / Minus
Query: 515 tctacctat-tatttatctatc-atgtatctggcatctat-tgatc-atctat-tatcta 569
|||| |||| ||| |||||||| || ||||| |||||| | ||| |||||| ||||||
Sbjct: 161 tctatctatctatctatctatctatctatct---atctatct-atctatctatctatcta 106
Query: 570 tctattttt-tatccctcatctattatc-ta--tctatctatctatctatctatctatct 625
||||| | | |||| | ||| ||||| || |||||||||| ||| ||||||||||||
Sbjct: 105 tctatctatctatc--tg-tctgttatcatagatctatctatcaatc-atctatctatct 50
Query: 626 atctatctatctatctatctatctatctatctatctatcta 666
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 49 atctatctatctatctatctatctatctatctatctatcta 9
Score = 132 bits (68), Expect = 1e-34
Identities = 87/96 (90%), Gaps = 9/96 (9%)
Strand = Plus / Minus
Query: 587 atctat--tatcta--tc---tatctatctatctatctatctatctatctatctatctat 639
|||||| |||||| || |||| ||||||||||||||||||||||||||||||||||
Sbjct: 187 atctattatatctatgtctgttatc-atctatctatctatctatctatctatctatctat 129
Query: 640 ctatctatctatctatctatctatctatct-tctat 674
|||||||||||||||||||||||||||||| |||||
Sbjct: 128 ctatctatctatctatctatctatctatctatctat 93
Score = 93.5 bits (48), Expect = 5e-23
Identities = 74/84 (88%), Gaps = 8/84 (9%)
Strand = Plus / Minus
Query: 602 atctatctatctatcta--tctatctatctatctatctatctatctatctatctatctat 659
|||||| || |||||| ||| | |||| ||||||||||||||||||||||||||||||
Sbjct: 187 atctat-ta--tatctatgtctgt-tatc-atctatctatctatctatctatctatctat 133
Query: 660 ctatctatct-tctatatatctat 682
|||||||||| ||||| |||||||
Sbjct: 132 ctatctatctatctatctatctat 109
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 304
Number of extensions: 131
Number of successful extensions: 131
Number of sequences better than 10.0: 1
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 12
Length of query: 700
Length of database: 1100
Length adjustment: 10
Effective length of query: 690
Effective length of database: 1090
Effective search space: 752100
Effective search space used: 752100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
