NNNNCCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTCTCTGGTTCTACCCTGAGATCCTCACTGAGCAATTACTG
AATGTATTTGTTTACCACCTCATCCCAAACCCCAATTTCAAAGTTAAGCT
TCTTCTTCAACTTTATAATCTGTAGTTTGATGGAGAAAGAGCTTCAGCGG
GAAAATGAACAAACAAGTCTTAGGTGAAGGTTCTTCTCACTACAGTTCTT
GGAACTTGGGTTTGTGATGTGTTGCATCTTCAATACCTTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTNGTGTGTGGGATTGCAGATGG
ACACAAAAATACCTAGTGTTCGCATTGTTTAAAGATTTGTTTGTCATTCT
CTGAACTTGGGTTAGTCTGACACAAAACACATTATTTTATTATCATAACT
CAACTGTGCAAGAAAGCACTGTTGAGTCAAATGCACTGCTTTGAACTTAA
CCTTTTATTAAATCTACTTGACGAGTGTGACTTCAAGTATACTTAATGTC
AATTATGTGAAAGAACAGAACAAATGTGACCCATTTCTTTGTGTGAAGAC
ATATTTTTTGGCATGGTTATAACAAGTTACAACAATCATATTCTCTTGAC
AATCCACATTTATTTTATAAATTATTAAGATCACTCTTATGAGGATAGCT
TCTTCCTTATGGTTATTTAAATATGTTGATTACCTTTCCTTCTATAATTA
ACCTCCGCCCACTATTTTTT

NCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGCCCTAAATGGGACTCTTCC
TCCCAAGACTCAGATATCATTGTAGGAGAAGGGATGGAAAAATTGTAAAA
GCCAGATGTGTGACAATAACAAAAATATCACTGTCACTAACACAATAGGG
CACTTGTAAATATATACTATCAGCAGTTGTGACAGCATGGAAATGATGTG
GACATGACCTTGCCCAAGAGTCAGTATGGAAGGAAAGTGTGCTCATGAAA
TCCCACAGGTAGCTGAGGACATATGGACACTGTAGACTCCTGAGAAATAA
TTGTAAGCTTTCCTCAAGTCTGTGGCCCTTAAGTGGCAAAACCACTTTGG
AAATCTCTATGGAGGTTCCTCAGAAAATTGGAAATTGTTCTACCTAAAGA
CCCAGCTACACCACTACTGGGCATATACACAAAAGATGCTCCACCATATA
ACAAGGAGTATGTTTATAGTAGCCTTATATAAAATAGCCAGAAGCTGGAA
GTAACCCATATGTCCCTTAATAAAAAAATTGATACAGAAAATGTGGTACA
TTTATATAATGGAGTATTAATCAGTTATTAAAGTTGATTTCATGAAATCT
GCAGGCAAGTGTATAGAACTAGAAAATATCATCTTGAGTGAGGTAACCCA
GACACAAGAAAACACACATGGTATGTACTTACAGATAAGTGGATTTTAGC
CCAAAAC

Query= MSMg01no487_f10.b1 MSMg01no487_f10.b1 CHROMAT_FILE:
MSMg01no487_f10.b1 PHD_FILE: MSMg01no487_f10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:55 2005
         (528 letters)



>mm_chr1_98025996_98026923
          Length = 928

 Score =  895 bits (463), Expect = 0.0
 Identities = 506/525 (96%), Gaps = 9/525 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctctggttctaccctgagatcctcactgagcaattactgaatgtatttgttta 64
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctctggccctaccctgagatcctcactgagcaattactgaatgtatttgttta 264

                                                                       
Query: 65  ccacctcatcccaaaccccaatttcaaagttaagcttcttcttcaactttataatctgta 124
           |||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct: 265 ccacctcaacccaaaccccgatttcaaagctaagcttcttcttcaactttataatctgta 324

                                                                       
Query: 125 gtttgatggagaaagagcttcagcgggaaaatgaacaaacaagtcttaggtgaaggttct 184
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 325 gtttgatggagaaagagcttcagcaggaaaatgaacaaacaagtcttaggtgaaggttct 384

                                                                       
Query: 185 tctcactacagttcttggaacttgggtttgtgatgtgttgcatcttcaataccttgtgtg 244
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 385 tctcactacagttcttggaacttggttttgtgatgtgttgcatcttcaataccttgtgtg 444

                                                                       
Query: 245 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt-gtngtgtgtgggattgcagatggaca 303
           ||||||||||||||||||||||||||||||||| |        |||||||||||||||||
Sbjct: 445 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtag--------gggattgcagatggaca 496

                                                                       
Query: 304 caaaaatacctagtgttcgcattgtttaaagatttgtttgtcattctctgaacttgggtt 363
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 caaaaatacctagtgtttgcattgtttaaagatttgtttgtcattctctgaacttgggtt 556

                                                                       
Query: 364 agtctgacacaaaacacattattttattatcataactcaactgtgcaagaaagcactgtt 423
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 agtctgacataaaacacattattttattatcataactcaactgtgcaagaaagcactgtt 616

                                                                       
Query: 424 gagtcaaatgcactgctttgaacttaaccttttattaaatctacttgacgagtgtgactt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 617 gagtcaaatgcactgctttgaacttaaccttttattaaatctacttgacaagtgtgactt 676

                                                        
Query: 484 caagtatacttaatgtcaattatgtgaaagaacagaacaaatgtg 528
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 caagtatacttaatgtcaattatgtgaaagaacagaacaaatgtg 721


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 57
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 928
Length adjustment: 10
Effective length of query: 518
Effective length of database: 918
Effective search space:   475524
Effective search space used:   475524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)