Query= MSMg01no487_l05.b1 MSMg01no487_l05.b1 CHROMAT_FILE:
MSMg01no487_l05.b1 PHD_FILE: MSMg01no487_l05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:23 2005
(534 letters)
>mm_chr1_91594866_91595799
Length = 934
Score = 911 bits (471), Expect = 0.0
Identities = 519/535 (97%), Gaps = 2/535 (0%)
Strand = Plus / Minus
Query: 1 ccgattaaattactctggctaaaacagttttacgataaacttgattcattttaaccctgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 ccgattaaattactctggctaaaacagttttacgataaacttgattcattttaaccctgt 675
Query: 61 catatcttttcaaagatgtaattttctatacaaaatgaacttggggctaaataatttatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 catatcttttcaaagatgtaattttctatacaaaatgaacttggggctaaataatttatg 615
Query: 121 aagtgcttcccattacttacgagtccaacagagagtgtgtacactgcaccagcatcattc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 aagtgcttcccattacttacgagtccaacagagagtgtgtacactgcaccagcatcattc 555
Query: 181 tcattgggagccatttttctttgggacccaaactgaaagcgagggctgtgcaaaggcagg 240
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 tcactgggagccatttttctttgggacccaaactgaaagcgagggctgtgcaaaggcagg 495
Query: 241 agccttcttttttttagg-atggcacggagggagagacgagccatgctccacacagacac 299
|||||||| ||||||| || |||||||| || ||||||||||||||||||||||||||
Sbjct: 494 agccttctgcgttttaggaat-gcacggagagacagacgagccatgctccacacagacac 436
Query: 300 ccacctacaggcatttgaagacccactttctttcctaaagcaagccccttccccaacacc 359
||| ||||||||||||||||||| |||||||||||||||||||| | ||||||||||||
Sbjct: 435 ccatctacaggcatttgaagacctactttctttcctaaagcaagttctttccccaacacc 376
Query: 360 acacctttctttccccttccattcacagcctgtcagtctgctccacctttaaacttcgac 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 375 acacctttctttccccttccattcacagcctgtcagtctgctccacctttaaacttctac 316
Query: 420 tcaaatgcagagtcccacatccgcggttcccactgctgtgtctgcagcaggggtcagcac 479
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 315 tcaaatgcagagtcccacatccgcggttcccactgctgtgcctgcagcaggggtcagcac 256
Query: 480 tcagctctgcagctgacctgagaagcactaatgaggcagggtctcaacctcctgt 534
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 255 tcagctctgcagctgacctgggaagcactaatgaggcagggtctcaacctcctgt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 934
Length adjustment: 10
Effective length of query: 524
Effective length of database: 924
Effective search space: 484176
Effective search space used: 484176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no487_l05.g1 MSMg01no487_l05.g1 CHROMAT_FILE:
MSMg01no487_l05.g1 PHD_FILE: MSMg01no487_l05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:23 2005
(669 letters)
>mm_chr1_91440557_91441624
Length = 1068
Score = 1255 bits (649), Expect = 0.0
Identities = 664/669 (99%), Gaps = 1/669 (0%)
Strand = Plus / Plus
Query: 1 aatgtgtgctcggtggtgttctcattgcccgactattgttaacccaacttttatgtcaag 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 201 aatgtgtgctcggtggtgttctcattgcccgactattgttaacc-aacttttatgtcaag 259
Query: 61 agaaagttcatacagagggtcagctgtgttctgtttgctacttcatgggacagctatgtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 agaaagttcatacagagggtcagctgtgttctgtttgctacttcatgggacagctatgtg 319
Query: 121 atctgcctctggggagctgggctgtttcaaaactgggtcagatcattgtttatctttgtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 atctgcctctggggagctgggctgtttcaaaactgggtcagatcattgtttatctttgtt 379
Query: 181 ttgctttggtctataccaaagacagaattctttccttaaaaaagagcctccctgagtgct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ttgctttggtctataccaaagacagaattctttccttaaaaaagagcctccctgagtgct 439
Query: 241 cgtatgtttttggggtagacatcaaaggcagtatataaaaagacttttgctttgacagta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 cgtatgtttttggggtagacatcaaaggcagtatataaaaagacttttgctttgacagta 499
Query: 301 tccaaatgattgaataatttttggctctcacaaacactgcaaccaaaattaaagggcaaa 360
|||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||
Sbjct: 500 tccaaatgattgaataatttttggctctcacaaatactgtaagcaaaattaaagggcaaa 559
Query: 361 cttgaagtatttacagcatatgactaggaatggtctttcatatgtaaacagtttttacaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 cttgaagtatttacagcatatgactaggaatggtctttcatatgtaaacagtttttacaa 619
Query: 421 aacaatgagaaaaattccacaacaaaaaaaaatggtcatagaacccatgaaaaaagaaat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 aacaatgagaaaaattccacaacaaaaaaaaatggtcatagaacccatgaaaaaagaaat 679
Query: 481 acatggtcaaataagaagtaagtatatttggttctgttagagaacaattgaaatgattgg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 acatggtcaaataagaagtaagtatatttggttctgttagagaacaattgaaatgattgg 739
Query: 541 ctgacatttcagtactaaaaccaagatcctgaaccactttagttcatggaacaagttcac 600
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 740 ctgacatttcagtactaaaaccaagatcctgaaccagtttagttcatggaacaagttcac 799
Query: 601 tgaaatgtttcctttttacactggtgtatgggaaggaaagtgggataactgtacagagaa 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 tgaaatgtttcctttttacactggtgtatgggaaggaaagtgggataactgtacagagaa 859
Query: 661 gaatatacc 669
|||||||||
Sbjct: 860 gaatatacc 868
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1068
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1058
Effective search space: 697222
Effective search space used: 697222
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
