BAC Information

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BAC

Clone NameMSMg01-487N10
Chromosome1 (Build37)
Map Location 65,817,671 - 65,818,291
singlet/doubletsinglet
Overlap genenone
Upstream gene9430067K14Rik, LOC667245, LOC100043141, 4921521F21Rik, LOC667276, Cryge, Crygd, Crygc, Crygb, LOC654356, Cryga, D630023F18Rik, Idh1, Pip5k3, Pthr2, LOC100042716, EG628894, LOC100043165, LOC383520, EG667775
Downstream geneCrygf, LOC667781, EG667786, Mtap2, C030018G13Rik, Rpe, 1110028C15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-487N10.T7 (MSMg01no487_n10.b1)MSMg01-487N10.TJ (MSMg01no487_n10.g1)
ACCAG566705AG566706
length765758
length of high quality
(start - end)		643 (52 - 694)672 (76 - 747)
definitionCHROMAT_FILE: MSMg01no487_n10.b1 PHD_FILE: MSMg01no487_n10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:10:34 2005CHROMAT_FILE: MSMg01no487_n10.g1 PHD_FILE: MSMg01no487_n10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:10:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGGGGCTCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTCAAATGTTTCCTCTCAAATGGATAAGAAACACTTAGAG
AAATGTTAAACATCCTTAGTCATCAGGGAACTGCAAACCAAAATGACCCT
GAGATTCCAACTTACAGGAATCAGAATGGCCAAGATAAAAAATCTCAAGT
GACAGCTGATGCTGGCGAGGATGTGGAGAAAGAGGTAAATGTCAGAATAC
AGACCAAGAGCAGCTGAATGTGTGGCTTGCTCAGTAGAAGCATGAGACTA
AATAATACGTGAAGGATTCAGCAGTTGATGACTGGATAGTCAATGATGAG
TAAGATCCCACAAGGGTGGGCCAACCTAAGATAGGCACATACACCCTTAG
GCTGCCCTCTTCATAGATGGGATAAGAAAAACAGGTATAGCCTATGCCAC
CATCCTGCTTGCTATAAAGCCTGTTAAAAAACAAAACAAAACAAAACAAA
ACAAACAAACAAAAACAAAAACAAAAACAAAGAAGGGAGAACTATGGAGG
TTCTGTCCTGACCTGCATAGCAGGTGTTGCCCCATCATCTATATAGAAGG
GGGAACAAAATAATCACAGGAGGTAGAGGGAGAGAGGGTCCTTGAAAGGA
GTGAAGTAGGGTGGGGGGGCAGGATTAGAAGGGACAGGAGAGAAGTACAG
AGGGTCAGGAAACTGAATGGAATATATAACAGTGGGGGATGGGAAACTGG
AGGTAGCCACTAGAA

ACCAATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCAATGAAGGAATATCAAATGGCCA
AGAAGCACATAAAGAAATGTTCAACATTCTTAGTCATCAGGGAAATGCAA
ATAAAATGGCCCTGAGATTCCACCTCACAGCAGTCAGAATGGCTAAGATC
AAAAACTCAGGTGACATCAGATGCTGGCAAGGATGTGGAGAAACAGGAAC
ACTTCTCCATTGTTGGTGAGATTGCAAGCTGGTACAACCACTATGGAAAT
CAGTCTGCTAGTTCCTCAGTATTTTGAACTTATTACCTGAGGACCCAGCT
ATACCACTCCTAGACATATATCTAAAAGATGCTCTAACATACAACAAGGA
CACATGTTTGACTCTGTTCATAGCAGCCTTATTCATAATAACCAGAAGCT
GGAAACAACCCAGATTTCCTTCAACAGAGGAATGGACACAGAAAATGTGG
TACATTTACACAATGGAATACTACTCTGCTATTAAAAACAATGACTTTAT
GAAATTCTTAGGCAAATGGGTGGAACTAGAAAATATCATCCTGAGTGATG
TAACCCAGTCACAAAAGAACACATAAGGTATACACTCATTGATAAGTGAA
TATTAACCCCAAAGCTGGAATGCCCAAGATACAATTCATAGATCACATGA
AACTCAAGAAGAAGGAAGACCAAAGTGTGGATGCTTCAGTCCTTCTTAGA
AGATGGAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no487_n10.b1 MSMg01no487_n10.b1 CHROMAT_FILE:
MSMg01no487_n10.b1 PHD_FILE: MSMg01no487_n10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:34 2005
         (643 letters)



>mm_chr1_65817449_65818491
          Length = 1043

 Score = 1201 bits (621), Expect = 0.0
 Identities = 621/621 (100%)
 Strand = Plus / Plus

                                                                       
Query: 23  tctcaaatggataagaaacacttagagaaatgttaaacatccttagtcatcagggaactg 82
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 tctcaaatggataagaaacacttagagaaatgttaaacatccttagtcatcagggaactg 282

                                                                       
Query: 83  caaaccaaaatgaccctgagattccaacttacaggaatcagaatggccaagataaaaaat 142
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 caaaccaaaatgaccctgagattccaacttacaggaatcagaatggccaagataaaaaat 342

                                                                       
Query: 143 ctcaagtgacagctgatgctggcgaggatgtggagaaagaggtaaatgtcagaatacaga 202
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 ctcaagtgacagctgatgctggcgaggatgtggagaaagaggtaaatgtcagaatacaga 402

                                                                       
Query: 203 ccaagagcagctgaatgtgtggcttgctcagtagaagcatgagactaaataatacgtgaa 262
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 ccaagagcagctgaatgtgtggcttgctcagtagaagcatgagactaaataatacgtgaa 462

                                                                       
Query: 263 ggattcagcagttgatgactggatagtcaatgatgagtaagatcccacaagggtgggcca 322
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 ggattcagcagttgatgactggatagtcaatgatgagtaagatcccacaagggtgggcca 522

                                                                       
Query: 323 acctaagataggcacatacacccttaggctgccctcttcatagatgggataagaaaaaca 382
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 acctaagataggcacatacacccttaggctgccctcttcatagatgggataagaaaaaca 582

                                                                       
Query: 383 ggtatagcctatgccaccatcctgcttgctataaagcctgttaaaaaacaaaacaaaaca 442
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 ggtatagcctatgccaccatcctgcttgctataaagcctgttaaaaaacaaaacaaaaca 642

                                                                       
Query: 443 aaacaaaacaaacaaacaaaaacaaaaacaaaaacaaagaagggagaactatggaggttc 502
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 aaacaaaacaaacaaacaaaaacaaaaacaaaaacaaagaagggagaactatggaggttc 702

                                                                       
Query: 503 tgtcctgacctgcatagcaggtgttgccccatcatctatatagaagggggaacaaaataa 562
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 tgtcctgacctgcatagcaggtgttgccccatcatctatatagaagggggaacaaaataa 762

                                                                       
Query: 563 tcacaggaggtagagggagagagggtccttgaaaggagtgaagtagggtgggggggcagg 622
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 tcacaggaggtagagggagagagggtccttgaaaggagtgaagtagggtgggggggcagg 822

                                
Query: 623 attagaagggacaggagagaa 643
           |||||||||||||||||||||
Sbjct: 823 attagaagggacaggagagaa 843


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1043
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1033
Effective search space:   653889
Effective search space used:   653889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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