TCAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCATCAATATCCCAACTCAATTCTTCAACAAATTAGAAAGAGCAA
TCTGCAAATTCATCTGGAATAACAAAAAACCTAGGATAGCAAAAGCTCTT
CTCAAGGATAAAAGTACCTCTGGTGGAATCACCATGCCTGACCTAAGGCT
TTACTACAGAGCAATTGTGATAAAAACTGCTTGGAATTGGTATAGTGACA
GACAAATAAACCAATGAAATAGAATTGAAGATCCAGAAATGAACCCACAC
ACTTATGGTCACTTGATCTTCGACAAGGGCGCTAAAACCATCTAGTAGAA
GAAAGACAGCATTTTCAATAAATGGTGCTGGCACAACTGGTTGTTATCAT
GTAGAAGAATGTGAATTGATCCATTCCTATCTCCTTGTATTAAGGTCAAA
TCTAAGTGGATCAAGGAACTTCACATTAAACCAGAGACACTGAAACTTAT
AGAGGAGAAGGGTGGGGAAAAGCCTCGAAGATATGGGCACAGGGGATAAA
TTCCTGAATAGAACAGAAATGGCTTGTGTTGTAAGATCGAGGATTGACAA
ATGGGACCTCATGAAACTGCAAAGCTTCTGCAAGGCAAAAGATACTCTCA
ATAAGACAAAAAGGCCACCAACAGATTGGGAAAGGATCTTTACCTATCTT
AAATCAGATAGGGGACTAATATCCAATATATATATAAAGAACTCAAGAGG
GTGGTCTCCAGAAAATN

CATTGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATTCTCTTTTTTGAAACTTATTTTA
AATTTACTTCCATCTGAGGATGGAGGCTCTATTTTATACTGACTCTTCAT
CCAGTACTTAGAAAAATACAATATTTTATGGGTTACAAACATGGTGTACT
GCAAAGTAATAAATAGTGTAAAACATGCTATTAGTGGAATATACTTCTAA
ATAGTACATCACCAACATAGGCAGTGATAATATTCCTCATGCAAATTTAA
CCAATCAGATAAAATTAATCTTGCCCTGTAATAATTGGTCATTTAAATTG
ATAGATAAATGATTATGCTACTATTTTAGAGACAGAGATGTGAAGCTGAT
ATTCACTCTTTTCCAAGTGTACTGTGCTGCCACAGAAAAAAATGAAACTG
ATATCTTAAAACTAAGCTTTGTTCAAGTATTGACTATTTCATTAGCAAAA
TATATTTTCATAATTGAGATTAATATATAAATCAATACCCTGTCAGAAGG
GAAAAACAATTTGCTGTATTATCATGAACCCATATCTCACTTAAATCTCA
TATTTGTTTTATTCAGTGAAAAATGACTGTACCCTTAGGTAATATAGATT
AGAGAAATCAGGATAGGAAGTACTTAGATATGAATAATTTTCTATTTCTT
GAAGATAACTAGTATATTTATAGAAAATGGAATATGAATAAGCCAACATT
TGTATTCTG

Query= MSMg01no488_c04.g1 MSMg01no488_c04.g1 CHROMAT_FILE:
MSMg01no488_c04.g1 PHD_FILE: MSMg01no488_c04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:58 2005
         (667 letters)



>mm_chr1_149304313_149305380
          Length = 1068

 Score = 1237 bits (640), Expect = 0.0
 Identities = 661/668 (98%), Gaps = 1/668 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   attctcttttttgaaacttattttaaatttacttccatctgaggatggaggctctatttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attctcttttttgaaacttattttaaatttacttccatctgaggatggaggctctatttt 260

                                                                       
Query: 61  atactgactcttcatccagtacttag-aaaaatacaatattttatgggttacaaacatgg 119
           |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct: 261 atactgactcttcatccagtacttagaaaaaatataatattttatgggttacaaacatgg 320

                                                                       
Query: 120 tgtactgcaaagtaataaatagtgtaaaacatgctattagtggaatatacttctaaatag 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtactgcaaagtaataaatagtgtaaaacatgctattagtggaatatacttctaaatag 380

                                                                       
Query: 180 tacatcaccaacataggcagtgataatattcctcatgcaaatttaaccaatcagataaaa 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tacatcaccaacataggcagtgataatattcctcatgcaaatttaaccaatcagataaaa 440

                                                                       
Query: 240 ttaatcttgccctgtaataattggtcatttaaattgatagataaatgattatgctactat 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttaatcttgccctgtaataattggtcatttaaattgatagataaatgattatgctactat 500

                                                                       
Query: 300 tttagagacagagatgtgaagctgatattcactcttttccaagtgtactgtgctgccaca 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttagagacagagatgtgaagctgatattcactcttttccaagtgtactgtgctgccaca 560

                                                                       
Query: 360 gaaaaaaatgaaactgatatcttaaaactaagctttgttcaagtattgactatttcatta 419
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 561 gaaaaaaatgaaactgatatcttaaaactaagctttgtttaagtattgactatttcatta 620

                                                                       
Query: 420 gcaaaatatattttcataattgagattaatatataaatcaataccctgtcagaagggaaa 479
           | |||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||
Sbjct: 621 gtaaaatatattttcataattgagattaatatataaatcaatacactctcagaagagaaa 680

                                                                       
Query: 480 aacaatttgctgtattatcatgaacccatatctcacttaaatctcatatttgttttattc 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aacaatttgctgtattatcatgaacccatatctcacttaaatctcatatttgttttattc 740

                                                                       
Query: 540 agtgaaaaatgactgtacccttaggtaatatagattagagaaatcaggataggaagtact 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agtgaaaaatgactgtacccttaggtaatatagattagagaaatcaggataggaagtact 800

                                                                       
Query: 600 tagatatgaataattttctatttcttgaagataactagtatatttatagaaaatggaata 659
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tagatatgaataattttctatttcttgaagataactagtatatttatagaaaatggaata 860

                   
Query: 660 tgaataag 667
           ||||||||
Sbjct: 861 tgaataag 868


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1068
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1058
Effective search space:   695106
Effective search space used:   695106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)