Query= MSMg01no488_f07.b1 MSMg01no488_f07.b1 CHROMAT_FILE:
MSMg01no488_f07.b1 PHD_FILE: MSMg01no488_f07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:13 2005
(685 letters)
>mm_chr1_128493588_128494672
Length = 1085
Score = 1181 bits (611), Expect = 0.0
Identities = 647/681 (95%), Gaps = 34/681 (4%)
Strand = Plus / Minus
Query: 5 gaattcattttttcaaagaacaaaaaaaacaaagaaacaaaagagagagagagagagaga 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 979 gaattcattttttcaaagaacaaaaaaaacaaagaaacaaaagagagagagagagagaga 920
Query: 65 gagagagagagagagagagagagagagagagagagagagagagagagagagagagaaaga 124
||||||||||||||||||||||| |||
Sbjct: 919 gagagagagagagagagagagag----------------------------------aga 894
Query: 125 gagagagaagctctccttgaaaggctcacgagcagaactgtggtatataggaggcatggt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 893 gagagagaagctctccttgaaaggctcacgagcagaactgtggtatataggaggcatggt 834
Query: 185 ttgcaagggtttgaatatgacgttaaaataccttcttgtggttcaggctgatttttgtgg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 833 ttgcaagggtttgaatatgacgttaaaataccttcttgtggttcaggctgatttttgtgg 774
Query: 245 ggctggagtttagcttaattaaggtatctgcaatttaccagcatgttctgctgcccactg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 ggctggagtttagcttaattaaggtatctgcaatttaccagcatgttctgctgcccactg 714
Query: 305 gtcaatggaacccctggtgaccaagcacacttgtttaaagtaagagccagaggccctttg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 gtcaatggaacccctggtgaccaagcacacttgtttaaagtaagagccagaggccctttg 654
Query: 365 acctttgaatatattatctgagagagttatggtcatctggctccccagatgacctgagcc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 acctttgaatatattatctgagagagttatggtcatctggctccccagatgacctgagcc 594
Query: 425 tgcagctgctctgccagctggctgtcacacgcttgcagcagaaaacttggaggggactca 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 tgcagctgctctgccagctggctgtcacacgcttgcagcagaaaacttggaggggactca 534
Query: 485 gcctcaccagatgccttatctcagagtccagctgatgctccacgcagagggagccgattc 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 gcctcaccagatgccttatctcagagtccagctgatgctccacgcagagggagccgattc 474
Query: 545 tgtgctttgtatatggtgacctgatttaagtgcaatagatgattcttttaatatagtaca 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 tgtgctttgtatatggtgacctgatttaagtgcaatagatgattcttttaatatagtaca 414
Query: 605 gggagcaccttatatgtgtggtttacaaaggcacaggctgtggtcagattagtggccact 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 gggagcaccttatatgtgtggtttacaaaggcacaggctgtggtcagattagtggccact 354
Query: 665 ggtaacagtggctaccagata 685
|||||||||||||||||||||
Sbjct: 353 ggtaacagtggctaccagata 333
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 102
Number of extensions: 36
Number of successful extensions: 36
Number of sequences better than 10.0: 1
Number of HSP's gapped: 27
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1085
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1075
Effective search space: 725625
Effective search space used: 725625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no488_f07.g1 MSMg01no488_f07.g1 CHROMAT_FILE:
MSMg01no488_f07.g1 PHD_FILE: MSMg01no488_f07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:13 2005
(645 letters)
>mm_chr1_128317631_128318675
Length = 1045
Score = 1166 bits (603), Expect = 0.0
Identities = 633/643 (98%)
Strand = Plus / Plus
Query: 1 tgagagtagaagctgagactgaaacaataactctttctccttcagcccacagcaagcgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 201 tgagagtagaagctgagactgaaacaataactctttctccttcagcccacagcaagcatt 260
Query: 61 gagatataattagcacagctttatcttctacacccaatactcattcaaaaccactgtcct 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 261 gagatataattagcacagctttatcttctacacccaatactcattcaaaaccactgccct 320
Query: 121 ggagttgtggggtgcagctcaggtgatagagtcttcactgagtacgcaaaaagccctggg 180
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 321 ggatttgtggggtgcagctcaggtgatagagtcttcactgagtacacaaaaagccctggg 380
Query: 181 ttcaattcccagtgctgcataaactgctcctggtagcgcacatctacaatcccagcacac 240
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct: 381 ttcaattcccagtgctgcataaactgctcctggtagcacacatctacaatcccagcactc 440
Query: 241 tgaaggtggaggcaagacaatgagaaattcagggtcatccctgactaaacaatgattgtg 300
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgaaggtggaggctagacaatgagaaattcagggtcatccctgactaaacaatgattgtg 500
Query: 301 aggtcagcctgggctatattagtctctatctgaggaagggttgagaaacagccaatgggt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggtcagcctgggctatattagtctctatctgaggaagggttgagaaacagccaatgggt 560
Query: 361 agactatatgcagcacaggaatcaggacctgcccttggacacccaacactcgcaaaagcc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agactatatgcagcacaggaatcaggacctgcccttggacacccaacactcgcaaaagcc 620
Query: 421 aggtatggcagtgcacacctgtaacaccatgctgagacagaggtaggcacatacccagag 480
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 621 aggtatggcagtgcacacctgtaacaccatgctgagacagaggcaggcacatacccagag 680
Query: 481 ctcactggccaggaagtctagccataacagtgatctctaagttgtgtaggagacggcttg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 681 ctcactggccaggaagtctagccataacagtgatctctaagttgtgtaggagacgacttg 740
Query: 541 ttttagtgtcattctgttattgtggtcccagcttttccaaagggaagaacagcaggaaac 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctttagtgtcattctgttattgtggtcccagcttttccaaagggaagaacagcaggaaac 800
Query: 601 tgaaggcaagcctggttgttactctacacagtactacctctga 643
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tgaaggcaagcctggttgttactctacacagtactacctctga 843
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1045
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1035
Effective search space: 657225
Effective search space used: 657225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
