BAC Information

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BAC

Clone NameMSMg01-488H21
Chromosome1 (Build37)
Map Location 66,215,452 - 66,375,722
singlet/doubletdoublet
Overlap geneMtap2
Upstream geneIdh1, Pip5k3, Pthr2, LOC100042716, EG628894, LOC100043165, LOC383520, EG667775, Crygf, LOC667781, EG667786
Downstream geneC030018G13Rik, Rpe, 1110028C15Rik, Acadl, Myl1, LOC100043192, Lancl1, Cps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-488H21.T7 (MSMg01no488_h21.b1)MSMg01-488H21.TJ (MSMg01no488_h21.g1)
ACCAG567202AG567203
length728752
length of high quality
(start - end)
598 (37 - 634)537 (75 - 611)
definitionCHROMAT_FILE: MSMg01no488_h21.b1 PHD_FILE: MSMg01no488_h21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:11:26 2005CHROMAT_FILE: MSMg01no488_h21.g1 PHD_FILE: MSMg01no488_h21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:11:26 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,375,129 - 66,375,722)(66,215,452 - 66,215,988)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATTA
TGCTGTAATAAGCAGAGACCACGGGCAGGAAGAATGAAACGCCACCAGCT
CATTATGGCTGGTTTAATGGATCATTCACAAAACAATGGGCCATAATGAC
AAAAGCTCAGGAGTAAAGGCAGGCAATTCTCCCTCACCTCAGAGAGGCTG
AGGAGGATGCAGTCTTATTGTACAAAACCAAGGGCTCACCCTGGACTGGC
TTATGGCAATGGCGCTGATCATTTCTGTTGTTGAGGGGATGGGTATTTCC
CTTCTGACCTCTCACAAATAAGAGTGTAGTTCCAGCCACTTTGTAACCTG
ATTCTTGTCCAAATACAGAACCACAGACCCCTTTCTGACCTTAGCATTCA
GAGTCGGAACTTGACCAGGATCCCTGCTCTTCACTTCTGCTTTCCAGTTT
CAGAGGCAGTTCTCTTAGCATCTCCTCTTTCCCTCATAGAACCTGTGCTC
TCCAAGGTAACCATGGCAGCAAGGTGTGCATTTTACTTGCTATTCCACTG
GCTATTTCTTCCCCTAGAAGGAAACTGCATAGTCTAGGAAAAGAACATGG
AGTCTAAAGTACAAAAAAAATATTAATGGCTGAGTGGATAAATTTGCCCT
TCCAGTTAGAAGAAAGTCTAGACATTATTTCTAAGTCTTGACATTTTCTC
TTTATCACAAGAAACTCTCTTCTTTTTT
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCACGCTAGTTATGATCAGTTGCTGT
TCCCACCCCTGGCCTTGGCCACTAGTGATCTCCTTGTGGGCTTGGCAGCT
TTGCTTTTTATAAAATGCCATTCGAATAAAGTCACACAGGAAGTTCTTTG
TATCTGGCTCCTTCAATTTAGCAAAATGCCTCAGTGTTTATCCTGGTTGT
TTCATGTGTCAGTGTCTGGGCCCTGAGACAGCACTGTGTCCTAGCACAGA
AATCTGTCATACTTGGTTCATTCAACTTCCTAAGTGATAGATGTTTGGAC
GACTTCCATTTTTTGAATATTGGATGTTATGCTCCTATGAGCACGAAGAT
TTTTTTTTCTAGGCTAAGTGGATGAGAATAGAATAGTTAGGTCATGTGGT
AGGTATATTCTTAAGTTTTTAAAGTGGACTAAAAGCTATGCAAAGTAGAT
GCTCACTTCTGTAATCTTATATTAATCTACAATCCCTAGGGTTTTCCCTG
CTCACAGCCATATCAGCACTTGACATTTTTGTTTATCTTTTGAACTGAAC
ACATTTTAGTGTGTATTAGTAACATCTTGTTTGCATTTGAATTAAAATTT
CATATTGATTCATGATACGAACCCTCTCTGTATGTTCTTAACTGCTGTTA
TTATACCCTTGGTAGTGAAGTGCCTGCTATAATATATTTGGGATGGATAA
CC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no488_h21.b1 MSMg01no488_h21.b1 CHROMAT_FILE:
MSMg01no488_h21.b1 PHD_FILE: MSMg01no488_h21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:26 2005
         (598 letters)



>mm_chr1_66374925_66375922
          Length = 998

 Score = 1141 bits (590), Expect = 0.0
 Identities = 593/594 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcattatgctgtaataagcagagaccacgggcaggaagaatgaaacgccaccagct 64
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 gaattcattatgttgtaataagcagagaccacgggcaggaagaatgaaacgccaccagct 739

                                                                       
Query: 65  cattatggctggtttaatggatcattcacaaaacaatgggccataatgacaaaagctcag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 cattatggctggtttaatggatcattcacaaaacaatgggccataatgacaaaagctcag 679

                                                                       
Query: 125 gagtaaaggcaggcaattctccctcacctcagagaggctgaggaggatgcagtcttattg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 gagtaaaggcaggcaattctccctcacctcagagaggctgaggaggatgcagtcttattg 619

                                                                       
Query: 185 tacaaaaccaagggctcaccctggactggcttatggcaatggcgctgatcatttctgttg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 tacaaaaccaagggctcaccctggactggcttatggcaatggcgctgatcatttctgttg 559

                                                                       
Query: 245 ttgaggggatgggtatttcccttctgacctctcacaaataagagtgtagttccagccact 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ttgaggggatgggtatttcccttctgacctctcacaaataagagtgtagttccagccact 499

                                                                       
Query: 305 ttgtaacctgattcttgtccaaatacagaaccacagacccctttctgaccttagcattca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ttgtaacctgattcttgtccaaatacagaaccacagacccctttctgaccttagcattca 439

                                                                       
Query: 365 gagtcggaacttgaccaggatccctgctcttcacttctgctttccagtttcagaggcagt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 gagtcggaacttgaccaggatccctgctcttcacttctgctttccagtttcagaggcagt 379

                                                                       
Query: 425 tctcttagcatctcctctttccctcatagaacctgtgctctccaaggtaaccatggcagc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 tctcttagcatctcctctttccctcatagaacctgtgctctccaaggtaaccatggcagc 319

                                                                       
Query: 485 aaggtgtgcattttacttgctattccactggctatttcttcccctagaaggaaactgcat 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 aaggtgtgcattttacttgctattccactggctatttcttcccctagaaggaaactgcat 259

                                                                 
Query: 545 agtctaggaaaagaacatggagtctaaagtacaaaaaaaatattaatggctgag 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 agtctaggaaaagaacatggagtctaaagtacaaaaaaaatattaatggctgag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 998
Length adjustment: 10
Effective length of query: 588
Effective length of database: 988
Effective search space:   580944
Effective search space used:   580944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no488_h21.g1 MSMg01no488_h21.g1 CHROMAT_FILE:
MSMg01no488_h21.g1 PHD_FILE: MSMg01no488_h21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:26 2005
         (537 letters)



>mm_chr1_66215252_66216188
          Length = 937

 Score = 1038 bits (537), Expect = 0.0
 Identities = 537/537 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccacgctagttatgatcagttgctgttcccacccctggccttggccactagtgatctcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccacgctagttatgatcagttgctgttcccacccctggccttggccactagtgatctcct 260

                                                                       
Query: 61  tgtgggcttggcagctttgctttttataaaatgccattcgaataaagtcacacaggaagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtgggcttggcagctttgctttttataaaatgccattcgaataaagtcacacaggaagt 320

                                                                       
Query: 121 tctttgtatctggctccttcaatttagcaaaatgcctcagtgtttatcctggttgtttca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctttgtatctggctccttcaatttagcaaaatgcctcagtgtttatcctggttgtttca 380

                                                                       
Query: 181 tgtgtcagtgtctgggccctgagacagcactgtgtcctagcacagaaatctgtcatactt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtgtcagtgtctgggccctgagacagcactgtgtcctagcacagaaatctgtcatactt 440

                                                                       
Query: 241 ggttcattcaacttcctaagtgatagatgtttggacgacttccattttttgaatattgga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggttcattcaacttcctaagtgatagatgtttggacgacttccattttttgaatattgga 500

                                                                       
Query: 301 tgttatgctcctatgagcacgaagatttttttttctaggctaagtggatgagaatagaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgttatgctcctatgagcacgaagatttttttttctaggctaagtggatgagaatagaat 560

                                                                       
Query: 361 agttaggtcatgtggtaggtatattcttaagtttttaaagtggactaaaagctatgcaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agttaggtcatgtggtaggtatattcttaagtttttaaagtggactaaaagctatgcaaa 620

                                                                       
Query: 421 gtagatgctcacttctgtaatcttatattaatctacaatccctagggttttccctgctca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtagatgctcacttctgtaatcttatattaatctacaatccctagggttttccctgctca 680

                                                                    
Query: 481 cagccatatcagcacttgacatttttgtttatcttttgaactgaacacattttagtg 537
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cagccatatcagcacttgacatttttgtttatcttttgaactgaacacattttagtg 737


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 937
Length adjustment: 10
Effective length of query: 527
Effective length of database: 927
Effective search space:   488529
Effective search space used:   488529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)