Query= MSMg01no488_m03.b1 MSMg01no488_m03.b1 CHROMAT_FILE:
MSMg01no488_m03.b1 PHD_FILE: MSMg01no488_m03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:46 2005
(676 letters)
>mm_chr2_98546646_98547723
Length = 1078
Score = 1222 bits (632), Expect = 0.0
Identities = 666/678 (98%), Gaps = 2/678 (0%)
Strand = Plus / Minus
Query: 1 gatttcttgtttcatttttcaggaagtcagtttccattttatacaaaaagaattgtctaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 878 gatttcttgtttcatttttcaggaagtcagtttccattttatacaaaaagaattgtctaa 819
Query: 61 ggcttttctgtgaggagcttgaaaatctgtcataactaacatacactaactaaggtgttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 818 ggcttttctgtgaggagcttgaaaatctgtcataactaacatacactaactaaggtgttt 759
Query: 121 tcatgtggatttaagaggtgagtggtgttaaaggtatatgtgtcgaacctttactcatac 180
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 tcatgtggacttaagaggtgagtggtgttaaaggtatatgtgtcgaacctttactcatac 699
Query: 181 tggcttaggtcacaggttctctccttctttcttaattctagagactgatctgtgcatttt 240
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 698 tggcttaggtcacaggttctctccttctttcttcattctagagactgatctgtgcatttt 639
Query: 241 attattatgcttccccagctttgttcaatgccctaacaattctgtggtggaataggggta 300
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 aagagcatgcttccccagctttgttcaatgccctaacaattctgtggtggaataggggta 579
Query: 301 tgatctgagaggtttaagatatgagatgtgcagtacaatgacaaatgaccaagttggcct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 tgatctgagaggtttaagatatgagatgtgcagtacaatgacaaatgaccaagttggcct 519
Query: 361 ttcataaattatgatgcatatattctcaatgaaaaggtgtccaatggtctagatctggta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 ttcataaattatgatgcatatattctcaatgaaaaggtgtccaatggtctagatctggta 459
Query: 421 --ttttttttgtaaaatgcctgactacaaatgagagaaataattacaaacacttatatca 478
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 ttttttttttgtaaaatgtctgactacaaatgagagaaataattacaaacacttatatca 399
Query: 479 ttacagcatgaaaatacaccttcaaagttaattaatatcagggtaatcatctatgtacat 538
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 398 ttacagcatgaaaatacaccttcaaagtttattaatatcagggtaatcatctatgtacat 339
Query: 539 gcatattataaatcaagagtacttcaggtaataataaataaatagtctagtacatacatg 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 gcatattataaatcaagagtacttcaggtaataataaataaatagtctagtacatacatg 279
Query: 599 agccatattaacctctaatatattttgtaaataaagtcttctaacattgtaaaaggccta 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 278 agccatattaacctctaatatattttgtaaataaagtcttctaacattgtaaaagtccta 219
Query: 659 aatgtaaacatgtacagc 676
|| |||||||||||||||
Sbjct: 218 aaagtaaacatgtacagc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1078
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1068
Effective search space: 711288
Effective search space used: 711288
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no488_m03.g1 MSMg01no488_m03.g1 CHROMAT_FILE:
MSMg01no488_m03.g1 PHD_FILE: MSMg01no488_m03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:46 2005
(616 letters)
>mm_chr1_158697672_158698687
Length = 1016
Score = 1168 bits (604), Expect = 0.0
Identities = 613/616 (99%)
Strand = Plus / Minus
Query: 1 cgaggaaacttcatgctactcatacaatttttatgtacaattttatatatgtatgaaaat 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816 cgaggaaacttcacgctactcatacaatttttatgtacaattttatatatgtatgaaaat 757
Query: 61 aaaaagagaactttgggaggggaaaataatcctgaggatatgaaggaaatcctccagtga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 aaaaagagaactttgggaggggaaaataatcctgaggatatgaaggaaatcctccagtga 697
Query: 121 gaggcccttggccccttcagttctcccaaggacacatgcatgtcacctcagtgtctttca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 gaggcccttggccccttcagttctcccaaggacacatgcatgtcacctcagtgtctttca 637
Query: 181 agccaggctgggctatgagtccaagttgaccccagtgtgctagctgcttccttgggttgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 agccaggctgggctatgagtccaagttgaccccagtgtgctagctgcttccttgggttgc 577
Query: 241 ctataaatgagaattttgctgtgttgtctcccttgctaggtcaaggtaacgagtgccttg 300
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 ccagaaatgagaattttgctgtgttgtctcccttgctaggtcaaggtaacgagtgccttg 517
Query: 301 cttgttaccttgagtaggctcctcatactttttttggaaaggacacaggctggtgtagct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 cttgttaccttgagtaggctcctcatactttttttggaaaggacacaggctggtgtagct 457
Query: 361 ccctgattgtgtgatgtgtgggtcccaggatgtcagatactggggggttgtttgtagcat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 ccctgattgtgtgatgtgtgggtcccaggatgtcagatactggggggttgtttgtagcat 397
Query: 421 ctctaggaggatccatggcttcctgtggcactcagctccggacaggagggataggaagca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 ctctaggaggatccatggcttcctgtggcactcagctccggacaggagggataggaagca 337
Query: 481 gggctggaacaacttgtcataaggagacaggaggcattgagtgtctggggaatcctgcag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 gggctggaacaacttgtcataaggagacaggaggcattgagtgtctggggaatcctgcag 277
Query: 541 gaaggccaagacaggacaatggtgtgactacctgatgtgcagaagcacaccactgggctc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 gaaggccaagacaggacaatggtgtgactacctgatgtgcagaagcacaccactgggctc 217
Query: 601 actgagctctgaggcc 616
||||||||||||||||
Sbjct: 216 actgagctctgaggcc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1016
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1006
Effective search space: 609636
Effective search space used: 609636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
