Query= MSMg01no488_m10.b1 MSMg01no488_m10.b1 CHROMAT_FILE:
MSMg01no488_m10.b1 PHD_FILE: MSMg01no488_m10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:47 2005
(401 letters)
>mm_chr1_24424675_24425475
Length = 801
Score = 698 bits (361), Expect = 0.0
Identities = 391/401 (97%), Gaps = 2/401 (0%)
Strand = Plus / Minus
Query: 1 aaaaactgatctcatgttcttgttactgggaaagctatttataaggaatttttaatttat 60
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 406 aaaaattgatctcatgttcttgttactgggaaagctatttataaggattttttaatttat 347
Query: 61 ggaagggtctatactgctcttcattttagagacgctgacattttagtattcactgaaaac 120
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 ggaagggtctatactactcttcattttagagacgctgacattttagtattcactgaaaac 287
Query: 121 tacttataataaaaccacagacttttgatataaacatagaattcattttgagcacatact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 tacttataataaaaccacagacttttgatataaacatagaattcattttgagcacatact 227
Query: 181 ctaagaaagttttgtgtgtgtcattctaattttttaatataatataaactagcgattcct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 ctaagaaagttttgtgtgtgtcattctaattttttaatataatataaactagcgattcct 167
Query: 241 ttaatcattaatgtatttttatttcacttttcataattaatatgtaactatttcttgtga 300
|||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 166 ttaatcattaatatatttttatttcacttttcatagttaatatgtaactatttcttgtga 107
Query: 301 ttggactatgtatcatttatgtttttatgtagtcactttgtc-tcaagtaaaacctatca 359
||||||||||||||||||||||||||||||||||||||| || | || ||||||||||||
Sbjct: 106 ttggactatgtatcatttatgtttttatgtagtcactttttcttgaa-taaaacctatca 48
Query: 360 aaaataactaattgttaaatgaaccaactaaacttagaaga 400
|||||||||||||||||||||||||| ||||||||||||||
Sbjct: 47 aaaataactaattgttaaatgaaccacctaaacttagaaga 7
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 401
Length of database: 801
Length adjustment: 9
Effective length of query: 392
Effective length of database: 792
Effective search space: 310464
Effective search space used: 310464
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no488_m10.g1 MSMg01no488_m10.g1 CHROMAT_FILE:
MSMg01no488_m10.g1 PHD_FILE: MSMg01no488_m10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:47 2005
(642 letters)
>mm_chr1_24262368_24263409
Length = 1042
Score = 1180 bits (610), Expect = 0.0
Identities = 635/648 (97%), Gaps = 10/648 (1%)
Strand = Plus / Plus
Query: 1 agtatagtggtgtctctaaaacctaaacatagaacaaccatatgacccagcatcatactt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 agtatagtggtgtctctaaaacctaaacatagaacaaccatatgacccagcatcatactt 258
Query: 61 ctggatacatacccaaaggagtctatgtcaacgtaccacagagatacctacatatccttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 ctggatacatacccaaaggagtctatgtcaacgtaccacagagatacctacatatccttg 318
Query: 121 tttgataagcagctatattcacagctaaagtatggaatctgactgtccacaaacaagtga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tttgataagcagctatattcacagctaaagtatggaatctgactgtccacaaacaagtga 378
Query: 181 agaaataaagaaaaggtgtaatgtgagatacacacacatacacacacacacacacacaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 agaaataaagaaaaggtgtaatgtgagatacacacacatacacacacacacacacacaca 438
Query: 241 --at----ttttttttattgatctataaagaactcaatgatgtcatttcctggaaaatgg 294
|| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 caatggagtttt----attgatctataaagaactcaatgatgtcatttcctggaaaatgg 494
Query: 295 acagaacaggaggtcatcctattaactgatgtaaataagatgcagaaataaaaatacaat 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 acagaacaggaggtcatcctattaactgatgtaaataagatgcagaaataaaaatacaat 554
Query: 355 gttttcgctcctatgggtcctagaactctttatatgtacatgaattaatttaaatatatt 414
|||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct: 555 gttttcgctcttatgggtcctagaactcttcataggtacatgaattaatttaaatatatt 614
Query: 415 catatgggtatatacatatgacaagaagacaagagtgagacagtatacaagcatataagc 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 catatgggtatatacatatgacaagaagacaagagtgagacagtatacaagcatataagc 674
Query: 475 aggcagagaatggagaggactaaagggaggaagtaatgagggtggatatgtcattgtatg 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 aggcagagaatggagaggactaaagggaggaagtaatgagggtggatatgtcattgtatg 734
Query: 535 cctgacaaaggctgtccatgtaaaaccaaacacaaagcacagtgagaacactccagctta 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 cctgacaaaggctgtccatgtaaaaccaaacacaaagcacagtgagaacactccagctta 794
Query: 595 aaaaacggagcaatatcttttgttctgcatctcagttgaatgttctat 642
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 aaaaacggagcaatatcttttgttctgcatctcagttgaatgttctat 842
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1042
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1032
Effective search space: 652224
Effective search space used: 652224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
