Query= MSMg01no488_m18.b1 MSMg01no488_m18.b1 CHROMAT_FILE:
MSMg01no488_m18.b1 PHD_FILE: MSMg01no488_m18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:49 2005
(665 letters)
>mm_chr1_80036279_80037343
Length = 1065
Score = 1251 bits (647), Expect = 0.0
Identities = 661/667 (99%), Gaps = 4/667 (0%)
Strand = Plus / Minus
Query: 1 attgcaaagacggctgggaaatgtagtttatttatgtgcccaggcaaagataaggctgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 947 attgcaaagacggctgggaaatgtagtttatttatgtgcccaggcaaagataaggctgtt 888
Query: 61 tggaaggagagctatctagccttatctagcacagtacactgttaaag--aaaaaaaaaaa 118
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 887 tggaaggagagctatctagccttatctagcacagtacactgttaaagaaaaaaaaaaaaa 828
Query: 119 aaccctgtaggaatcatgataaatattcatcaataaagacattctctcactggtagaaaa 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 827 aaccctgtaggaatcatgataaatattcatcaataaagacattctctcactggtagaaaa 768
Query: 179 agaagagaattgacatttatctaatgtctaccatgtgctttgtagcgtttttttttttta 238
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 767 agaagagaattgacatttatctaatgtctaccatgtgctttgtagcg--tttttttttta 710
Query: 239 gaagaaaggcttattctttttttatgtcccaaacttagcagattgtctaacatacaactg 298
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 gaagaaaggcttaatctttttttatgtcccaaacttagcagattgtctaacatacaactg 650
Query: 299 tcccagaaaaatctttgctaaactaaactttacaaaaaatatggaacttttaaaaatgtg 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 tcccagaaaaatctttgctaaactaaactttacaaaaaatatggaacttttaaaaatgtg 590
Query: 359 aactgtctaaacagttttcctaatcctgtttgtcttttctccccctgaacttccctctca 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 aactgtctaaacagttttcctaatcctgtttgtcttttctccccctgaacttccctctca 530
Query: 419 atgggccattattatttctgtttgatttttctagtgttagccttgtgagttcatctttcc 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 atgggccattattatttctgtttgatttttctagtgttagccttgtgagttcatctttcc 470
Query: 479 ctgctctattgctaattaaaacaagcagttaacttgacgttgacggttgctgttcttcaa 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 ctgctctattgctaattaaaacaagcagttaacttgacgttgacggttgctgttcttcaa 410
Query: 539 caatagcctcacagtgattctggttggatctgcccttattagagagatgattcagacaag 598
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 409 caatagcctcacagtgattcttgttggatctgcccttattagagagatgattcagacaag 350
Query: 599 ttcctgatatgtaaacacggggctgctaatgagtaaggatcattttcctgggttattttg 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 ttcctgatatgtaaacacggggctgctaatgagtaaggatcattttcctgggttattttg 290
Query: 659 ggggatg 665
|||||||
Sbjct: 289 ggggatg 283
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1065
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1055
Effective search space: 691025
Effective search space used: 691025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no488_m18.g1 MSMg01no488_m18.g1 CHROMAT_FILE:
MSMg01no488_m18.g1 PHD_FILE: MSMg01no488_m18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:49 2005
(628 letters)
>mm_chr1_79890409_79891436
Length = 1028
Score = 961 bits (497), Expect = 0.0
Identities = 581/629 (92%), Gaps = 33/629 (5%)
Strand = Plus / Plus
Query: 1 ctgttttatagaatagta-tttttttttctcttccactttgggcatttggtgaaataagt 59
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct: 201 ctgttttatagaatagtattttttttttctcttccactttgggcatttggtgaaataaat 260
Query: 60 gaatataatattgcaaatctctagggacaaaacagagattattcaagatatacaaaaact 119
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 261 gaatataatattgcaaatctctaggggcaaaacagagattattcaagatatacaaaaact 320
Query: 120 caaactatttgcttaatagatgaaaaaaaatcagtgatttatagcagttctgcgatgcag 179
|||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct: 321 caaactatttgcttaatagatg-aaaataatcagtgatttatagcagttctgcgatgcag 379
Query: 180 tcaaagtctcatgaaagtctggtaatcatttgaggtggcttagtcattgggactatgctc 239
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 380 tcaaagtctcatgaaagtctggtaatcatatgaggtggcttagtcattgggactatgctc 439
Query: 240 aagtatctagcatttgtcacaaactctgcccaggaaccagtattaacctttctcaaatta 299
||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 440 aagtatccagcatttgtcacaaactctgcccaggaaccagtactaacctttctcaaatta 499
Query: 300 tgtacgttgggtacaaagatgttttgtacaaaaagaattagctagataaatgagtttagg 359
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 500 tgtatgttgggtacaaagatgttttgtacaaaaagaattagctcgataaatgagtttagg 559
Query: 360 aaatagtttacactctctagatcttcttagagcattctaaagacccatgaacaatacagt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 aaatagtttacactctctagatcttcttagagcattctaaagacccatgaacaatacagt 619
Query: 420 atacacagaactgcaggtatatatatatatatatatatatatatatatatatatatatat 479
||||||||||||| ||| |||||||||| |
Sbjct: 620 atacacagaactgaaggaatatatatat-------------------------------t 648
Query: 480 atataatatacgtatatgcacactgtactttgtatatgtccctctgtctcccccgcaccc 539
||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||
Sbjct: 649 atataatatacgtatatgcacactgtactccgtatatgtccctctgtctcctccacaccc 708
Query: 540 cgtgtgtgtttgtgtgtgtgatttacatatctttttatagtggctcagtatgtttgagca 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 cgtgtgtgtttgtgtgtgtgatttacatatctttttatagtggctcagtatgtttgagca 768
Query: 600 gcaaaacctttgcagaaaacttacctggc 628
||||||||||| |||||||||||||||||
Sbjct: 769 gcaaaaccttttcagaaaacttacctggc 797
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1028
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1018
Effective search space: 629124
Effective search space used: 629124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
