Query= MSMg01no488_m24.b1 MSMg01no488_m24.b1 CHROMAT_FILE:
MSMg01no488_m24.b1 PHD_FILE: MSMg01no488_m24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:50 2005
(654 letters)
>mm_chr1_72998063_72999116
Length = 1054
Score = 1145 bits (592), Expect = 0.0
Identities = 647/686 (94%), Gaps = 33/686 (4%)
Strand = Plus / Minus
Query: 2 acccatgcaaagctgctgagtccatgaagagaattaagtagtcctttcctctatagaagg 61
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 703 acccatgcaaagctgctgagtccatgaatagaattaagtagtcctttcctctatagaagg 644
Query: 62 cctttgctccccacccagcctgcctcgtcccttctttcatgacccggtataacagtgggt 121
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 cctttgctacccacccagcctgcctcgtcccttctttcatgacccggtataacagtgggt 584
Query: 122 gattgatggaacctaagcaggcctccacctgctatgaactgtccccagagccagctgtct 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 gattgatggaacctaagcaggcctccacctgctatgaactgtccccagagccagctgtct 524
Query: 182 catgagtcattcttccgggttctgagggctttgtgatctgctcgcagcagtggctgtcaa 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 catgagtcattcttccgggttctgagggctttgtgatctgctcgcagcagtggctgtcaa 464
Query: 242 tcttcctccctcaaacccacatagggccaaggtcccgaccgaccatctgaagcctagctg 301
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 463 tcttcctccctcaaacccacatagggccaaggtcccaaccgaccatctgaagcctagctg 404
Query: 302 tccattctgggaggttggcacgcgggaagtcatggtctggtcccaagagcacagccaaag 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 tccattctgggaggttggcacgcgggaagtcatggtctggtcccaagagcacagccaaag 344
Query: 362 tgcagccttcactctttatcctctccagggtgagagaacagccacagaaggtgctttcat 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 tgcagccttcactctttatcctctccagggtgagagaacagccacagaaggtgctttcat 284
Query: 422 gccattaccattgctggcttttccctcaccctgctccccatggggcactgcgcc------ 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 gccattaccattgctggcttttccctcaccctgctccccatggggcactgcgccccctca 224
Query: 476 -------tcc--------------------tcacccctgctccccatggggcacttcatc 508
||| ||||||||||||||||||||||||||||||
Sbjct: 223 cccctgctccccatggggcactgcgccccctcacccctgctccccatggggcacttcatc 164
Query: 509 ccttcgattgacctggcctccagatctatctttcagccattgcatcacctctaggtccag 568
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 163 ccttcgattgacctggcctccagctctatctttcagccattgcatcacctctaggtccag 104
Query: 569 tctctggaccctttcccaggtcgccacacagcatcttcgctcctgctccatgaggatgac 628
|||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct: 103 tctctggaccctttcccaggtcaccacacagcatcttcgctcctgttccatgaggatgac 44
Query: 629 tgtactcagctgctctgtccaacaca 654
||||||||||||||||||||||||||
Sbjct: 43 tgtactcagctgctctgtccaacaca 18
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1054
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1044
Effective search space: 672336
Effective search space used: 672336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no488_m24.g1 MSMg01no488_m24.g1 CHROMAT_FILE:
MSMg01no488_m24.g1 PHD_FILE: MSMg01no488_m24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:50 2005
(617 letters)
>mm_chr1_72868946_72869963
Length = 1018
Score = 1114 bits (576), Expect = 0.0
Identities = 606/626 (96%), Gaps = 17/626 (2%)
Strand = Plus / Plus
Query: 1 aaacagattccacttacttcttctctctctctctttttttcttttgagaccaggtttctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 aaacagattccacttacttcttctctctctctctttttttcttttgagaccaggtttctc 244
Query: 61 cgtggaaccttggctgtcctggatcttgcttcacagaccaggctgcttggaacccaggga 120
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 cgtgtaaccttggctgtcctggatcttgcttcacagaccaggctgcttggaacccaggga 304
Query: 121 tttgcttgactctactgtccaagtgctgggattaaaggctcaccgccataccagactctt 180
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 tttgcctgactctgctgtccaagtgctgggattaaaggctcaccgccataccagactctt 364
Query: 181 tactgtgttttaatgccagtggtaggaaatatagctagcaatgtggctctcacttgtagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 tactgtgttttaatgccagtggtaggaaatatagctagcaatgtggctctcacttgtagt 424
Query: 241 ttacaatggatgtttatggcacaccatgatgcagggtggtatctctactacaaaggagtc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 ttacaatggatgtttatggcacaccatgatgcagggtggtatctctactacaaaggagtc 484
Query: 301 ctcagtcggtgaggccaataggaacatattccagggcaggtacaagacaccagaac---- 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 ctcagtcggtgaggccaataggaacatattccagggcaggtacaagacaccagaacacgt 544
Query: 357 ------------tggagcctcccccagcctttgttggtttccttctgttagatcgccatt 404
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 ggagatgtgaactggagcctcccccagcctttgttggtttccttctgttagatcgccatt 604
Query: 405 ctgtatagctcccgttattgtcagaggtccatccctctgctcaaacactgatgctgtgtc 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 ctgtatagctcccgttattgtcagaggtccatccctctgctcaaacactgatgctgtgtc 664
Query: 465 cctgacacgcccaaatcaggccaagtctcagcacaattagctgatttccctgccagttcc 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 cctgacacgcccaaatcaggccaagtctcagcacaattagctgatttccctgccagttcc 724
Query: 525 cctatctccccaggggttttgatctctggcctaagtgactttctagtttcagtatcactc 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 cctatctccccaggggttttgatctctggcctaagtgactttctagtttcagtatcactc 784
Query: 585 ttcaattttttt-catcatttctgct 609
|||||||||||| |||||||||||||
Sbjct: 785 ttcaattttttttcatcatttctgct 810
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1018
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1008
Effective search space: 611856
Effective search space used: 611856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
